20 items (Aspergillus brasiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9UQM2	BRCT domain-containing protein. (715 aa)
	A0A1L9UL98	UmuC domain-containing protein. (671 aa)
	A0A1L9UK55	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2234 aa)
	A0A1L9U8P0	CCHC-type domain-containing protein. (379 aa)
	A0A1L9U7V1	UmuC domain-containing protein. (605 aa)
	A0A1L9U8S5	Uncharacterized protein. (177 aa)
	A0A1L9U7D3	BRCT domain-containing protein. (321 aa)
	A0A1L9U6R9	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (674 aa)
	A0A1L9U6A6	Uncharacterized protein. (450 aa)
	A0A1L9U5R1	DNA polymerase. (1105 aa)
	A0A1L9U5C3	HORMA domain-containing protein. (277 aa)
	A0A1L9U2D8	CCHC-type domain-containing protein. (295 aa)
	A0A1L9U2M2	Zn(2)-C6 fungal-type domain-containing protein. (676 aa)
	A0A1L9US34	Uncharacterized protein. (266 aa)
	A0A1L9UXY3	DNA polymerase. (1929 aa)
	A0A1L9V0A6	POLAc domain-containing protein. (1135 aa)
	A0A1L9V2U1	DNA polymerase. (1665 aa)
	A0A1L9UI39	Uncharacterized protein. (536 aa)
	A0A1L9UH43	UmuC domain-containing protein. (600 aa)
	A0A1L9UDM5	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1166 aa)

Your Current Organism:

Aspergillus brasiliensis

NCBI taxonomy Id: 767769
Other names: A. brasiliensis CBS 101740, Aspergillus brasiliensis CBS 101740

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9U2M2	A0A1L9U5C3	Zn(2)-C6 fungal-type domain-containing protein.	HORMA domain-containing protein.	0.951
A0A1L9U2M2	A0A1L9U5R1	Zn(2)-C6 fungal-type domain-containing protein.	DNA polymerase.	0.756
A0A1L9U2M2	A0A1L9U6A6	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.441
A0A1L9U2M2	A0A1L9U7V1	Zn(2)-C6 fungal-type domain-containing protein.	UmuC domain-containing protein.	0.926
A0A1L9U2M2	A0A1L9UH43	Zn(2)-C6 fungal-type domain-containing protein.	UmuC domain-containing protein.	0.843
A0A1L9U2M2	A0A1L9UI39	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.783
A0A1L9U2M2	A0A1L9UK55	Zn(2)-C6 fungal-type domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.758
A0A1L9U2M2	A0A1L9UL98	Zn(2)-C6 fungal-type domain-containing protein.	UmuC domain-containing protein.	0.942
A0A1L9U2M2	A0A1L9UXY3	Zn(2)-C6 fungal-type domain-containing protein.	DNA polymerase.	0.719
A0A1L9U2M2	A0A1L9V2U1	Zn(2)-C6 fungal-type domain-containing protein.	DNA polymerase.	0.950
A0A1L9U5C3	A0A1L9U2M2	HORMA domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.951
A0A1L9U5C3	A0A1L9U5R1	HORMA domain-containing protein.	DNA polymerase.	0.960
A0A1L9U5C3	A0A1L9U6A6	HORMA domain-containing protein.	Uncharacterized protein.	0.954
A0A1L9U5C3	A0A1L9U7D3	HORMA domain-containing protein.	BRCT domain-containing protein.	0.951
A0A1L9U5C3	A0A1L9U7V1	HORMA domain-containing protein.	UmuC domain-containing protein.	0.910
A0A1L9U5C3	A0A1L9UDM5	HORMA domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.962
A0A1L9U5C3	A0A1L9UH43	HORMA domain-containing protein.	UmuC domain-containing protein.	0.909
A0A1L9U5C3	A0A1L9UI39	HORMA domain-containing protein.	Uncharacterized protein.	0.954
A0A1L9U5C3	A0A1L9UK55	HORMA domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.958
A0A1L9U5C3	A0A1L9UL98	HORMA domain-containing protein.	UmuC domain-containing protein.	0.978