27 items (Aspergillus brasiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9UWY6	SF1-HH domain-containing protein. (270 aa)
	A0A1L9UX75	SF3b1 domain-containing protein. (1232 aa)
	A0A1L9UZV5	Uncharacterized protein. (1579 aa)
	A0A1L9UZW5	RRM domain-containing protein. (428 aa)
	A0A1L9V064	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A1L9V1N0	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A1L9UC20	Uncharacterized protein. (354 aa)
	A0A1L9UC33	PSP domain-containing protein. (544 aa)
	A0A1L9V2Y2	Uncharacterized protein. (575 aa)
	A0A1L9V2F1	Uncharacterized protein. (573 aa)
	A0A1L9V229	Uncharacterized protein. (277 aa)
	A0A1L9UGH9	RRM domain-containing protein. (196 aa)
	A0A1L9UHW6	Sm domain-containing protein. (220 aa)
	A0A1L9UIY7	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1L9UJF4	PWI domain-containing protein. (764 aa)
	A0A1L9UKU1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	A0A1L9UL63	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
	A0A1L9UQF2	Uncharacterized protein. (677 aa)
	A0A1L9UQM6	Uncharacterized protein. (1184 aa)
	A0A1L9UQZ0	Uncharacterized protein. (797 aa)
	A0A1L9URX1	Sm domain-containing protein. (136 aa)
	A0A1L9US66	GH16 domain-containing protein. (476 aa)
	A0A1L9USL6	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (204 aa)
	A0A1L9UT30	Matrin-type domain-containing protein. (238 aa)
	A0A1L9UVX4	C2H2-type domain-containing protein. (505 aa)
	A0A1L9UW19	GH16 domain-containing protein. (397 aa)
	A0A1L9UWT1	CCHC-type domain-containing protein. (273 aa)

Your Current Organism:

Aspergillus brasiliensis

NCBI taxonomy Id: 767769
Other names: A. brasiliensis CBS 101740, Aspergillus brasiliensis CBS 101740

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9UC20	A0A1L9UC33	Uncharacterized protein.	PSP domain-containing protein.	0.999
A0A1L9UC20	A0A1L9UGH9	Uncharacterized protein.	RRM domain-containing protein.	0.981
A0A1L9UC20	A0A1L9UHW6	Uncharacterized protein.	Sm domain-containing protein.	0.991
A0A1L9UC20	A0A1L9UIY7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.975
A0A1L9UC20	A0A1L9UJF4	Uncharacterized protein.	PWI domain-containing protein.	0.793
A0A1L9UC20	A0A1L9UKU1	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.978
A0A1L9UC20	A0A1L9UL63	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.983
A0A1L9UC20	A0A1L9UQF2	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A1L9UC20	A0A1L9UQM6	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1L9UC20	A0A1L9UQZ0	Uncharacterized protein.	Uncharacterized protein.	0.732
A0A1L9UC20	A0A1L9URX1	Uncharacterized protein.	Sm domain-containing protein.	0.912
A0A1L9UC20	A0A1L9US66	Uncharacterized protein.	GH16 domain-containing protein.	0.874
A0A1L9UC20	A0A1L9USL6	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.984
A0A1L9UC20	A0A1L9UT30	Uncharacterized protein.	Matrin-type domain-containing protein.	0.997
A0A1L9UC20	A0A1L9UVX4	Uncharacterized protein.	C2H2-type domain-containing protein.	0.995
A0A1L9UC20	A0A1L9UW19	Uncharacterized protein.	GH16 domain-containing protein.	0.874
A0A1L9UC20	A0A1L9UWT1	Uncharacterized protein.	CCHC-type domain-containing protein.	0.581
A0A1L9UC20	A0A1L9UWY6	Uncharacterized protein.	SF1-HH domain-containing protein.	0.581
A0A1L9UC20	A0A1L9UX75	Uncharacterized protein.	SF3b1 domain-containing protein.	0.999
A0A1L9UC20	A0A1L9UZV5	Uncharacterized protein.	Uncharacterized protein.	0.755