43 items (Aspergillus brasiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9UJF4	PWI domain-containing protein. (764 aa)
	A0A1L9V2Y2	Uncharacterized protein. (575 aa)
	A0A1L9V2F1	Uncharacterized protein. (573 aa)
	A0A1L9V229	Uncharacterized protein. (277 aa)
	A0A1L9V1N0	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	A0A1L9V0C5	Uncharacterized protein. (436 aa)
	A0A1L9V0A2	MFAP1 domain-containing protein. (468 aa)
	A0A1L9UZW5	RRM domain-containing protein. (428 aa)
	A0A1L9U4C4	Uncharacterized protein; Belongs to the cytochrome P450 family. (485 aa)
	A0A1L9U8U2	Uncharacterized protein; Belongs to the cytochrome P450 family. (527 aa)
	A0A1L9U973	TPR_REGION domain-containing protein. (853 aa)
	A0A1L9UAG0	Uncharacterized protein. (413 aa)
	A0A1L9UBR9	Cwf21 domain-containing protein. (144 aa)
	A0A1L9UC20	Uncharacterized protein. (354 aa)
	A0A1L9UC33	PSP domain-containing protein. (544 aa)
	A0A1L9UGH9	RRM domain-containing protein. (196 aa)
	A0A1L9UH94	G-patch domain-containing protein. (775 aa)
	A0A1L9UHW6	Sm domain-containing protein. (220 aa)
	A0A1L9UIM7	Tr-type G domain-containing protein. (1010 aa)
	A0A1L9UIY7	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1L9UJ51	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	A0A1L9UJA5	Uncharacterized protein. (951 aa)
	A0A1L9UZL2	Uncharacterized protein. (506 aa)
	A0A1L9UZA8	Uncharacterized protein. (144 aa)
	A0A1L9UZ54	Uncharacterized protein. (253 aa)
	A0A1L9UZ17	RRM domain-containing protein. (385 aa)
	A0A1L9UYQ1	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1420 aa)
	A0A1L9UX75	SF3b1 domain-containing protein. (1232 aa)
	A0A1L9UVZ4	Uncharacterized protein. (290 aa)
	A0A1L9UVX4	C2H2-type domain-containing protein. (505 aa)
	A0A1L9UTB3	U1-type domain-containing protein. (299 aa)
	A0A1L9UT30	Matrin-type domain-containing protein. (238 aa)
	A0A1L9USL6	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (204 aa)
	A0A1L9USI3	Uncharacterized protein. (362 aa)
	A0A1L9URX1	Sm domain-containing protein. (136 aa)
	A0A1L9UQZ0	Uncharacterized protein. (797 aa)
	A0A1L9UQX1	Uncharacterized protein. (671 aa)
	A0A1L9UQH2	RRM domain-containing protein. (398 aa)
	A0A1L9UQF2	Uncharacterized protein. (677 aa)
	A0A1L9UNL8	CPSF_A domain-containing protein. (1209 aa)
	A0A1L9UME8	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	A0A1L9UL63	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
	A0A1L9UKE6	Uncharacterized protein. (347 aa)

Your Current Organism:

Aspergillus brasiliensis

NCBI taxonomy Id: 767769
Other names: A. brasiliensis CBS 101740, Aspergillus brasiliensis CBS 101740

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9U973	A0A1L9UAG0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.985
A0A1L9U973	A0A1L9UBR9	TPR_REGION domain-containing protein.	Cwf21 domain-containing protein.	0.947
A0A1L9U973	A0A1L9UC20	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.915
A0A1L9U973	A0A1L9UC33	TPR_REGION domain-containing protein.	PSP domain-containing protein.	0.989
A0A1L9U973	A0A1L9UGH9	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.949
A0A1L9U973	A0A1L9UH94	TPR_REGION domain-containing protein.	G-patch domain-containing protein.	0.949
A0A1L9U973	A0A1L9UHW6	TPR_REGION domain-containing protein.	Sm domain-containing protein.	0.929
A0A1L9U973	A0A1L9UIM7	TPR_REGION domain-containing protein.	Tr-type G domain-containing protein.	0.988
A0A1L9U973	A0A1L9UIY7	TPR_REGION domain-containing protein.	Small nuclear ribonucleoprotein G.	0.931
A0A1L9U973	A0A1L9UL63	TPR_REGION domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.745
A0A1L9U973	A0A1L9UNL8	TPR_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.953
A0A1L9U973	A0A1L9UQF2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A1L9U973	A0A1L9UQX1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.981
A0A1L9U973	A0A1L9USI3	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.859
A0A1L9U973	A0A1L9UT30	TPR_REGION domain-containing protein.	Matrin-type domain-containing protein.	0.958
A0A1L9U973	A0A1L9UVX4	TPR_REGION domain-containing protein.	C2H2-type domain-containing protein.	0.967
A0A1L9U973	A0A1L9UVZ4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.985
A0A1L9U973	A0A1L9UX75	TPR_REGION domain-containing protein.	SF3b1 domain-containing protein.	0.953
A0A1L9U973	A0A1L9UYQ1	TPR_REGION domain-containing protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.999
A0A1L9U973	A0A1L9UZ17	TPR_REGION domain-containing protein.	RRM domain-containing protein.	0.999