Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGL00055.1 | AGL00056.1 | Desgi_0483 | Desgi_0484 | Hypothetical protein. | PFAM: Nitroreductase family. | 0.556 |
| AGL00056.1 | AGL00055.1 | Desgi_0484 | Desgi_0483 | PFAM: Nitroreductase family. | Hypothetical protein. | 0.556 |
| AGL00056.1 | AGL00057.1 | Desgi_0484 | Desgi_0485 | PFAM: Nitroreductase family. | PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3; manually curated. | 0.518 |
| AGL00056.1 | AGL00058.1 | Desgi_0484 | Desgi_0486 | PFAM: Nitroreductase family. | 2-oxoacid:ferredoxin oxidoreductase, delta subunit. | 0.518 |
| AGL00057.1 | AGL00056.1 | Desgi_0485 | Desgi_0484 | PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3; manually curated. | PFAM: Nitroreductase family. | 0.518 |
| AGL00057.1 | AGL00058.1 | Desgi_0485 | Desgi_0486 | PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3; manually curated. | 2-oxoacid:ferredoxin oxidoreductase, delta subunit. | 0.773 |
| AGL00058.1 | AGL00056.1 | Desgi_0486 | Desgi_0484 | 2-oxoacid:ferredoxin oxidoreductase, delta subunit. | PFAM: Nitroreductase family. | 0.518 |
| AGL00058.1 | AGL00057.1 | Desgi_0486 | Desgi_0485 | 2-oxoacid:ferredoxin oxidoreductase, delta subunit. | PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3; manually curated. | 0.773 |
| AGL00059.1 | AGL03544.1 | Desgi_0487 | Desgi_4301 | PAS domain S-box; PFAM: Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.784 |
| AGL00173.1 | AGL03544.1 | Desgi_0613 | Desgi_4301 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.783 |
| AGL00212.1 | AGL03544.1 | Desgi_0657 | Desgi_4301 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; Propionate catabolism activator; PAS fold. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.784 |
| AGL00227.1 | AGL03544.1 | Desgi_0672 | Desgi_4301 | PAS domain S-box; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.774 |
| AGL00452.1 | AGL03544.1 | Desgi_0904 | Desgi_4301 | PAS domain S-box; PFAM: CBS domain; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.790 |
| AGL00662.1 | AGL03544.1 | Desgi_1138 | Desgi_4301 | PAS domain S-box; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.786 |
| AGL01227.1 | AGL03544.1 | Desgi_1779 | Desgi_4301 | PAS domain S-box; PFAM: CBS domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.835 |
| AGL01396.1 | AGL03544.1 | Desgi_1951 | Desgi_4301 | PAS domain S-box; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.783 |
| AGL01714.1 | AGL03544.1 | Desgi_2292 | Desgi_4301 | PAS domain S-box; PFAM: CBS domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.780 |
| AGL02298.1 | AGL02299.1 | Desgi_2900 | Desgi_2901 | Transcriptional activator of acetoin/glycerol metabolism; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. | Hypothetical protein. | 0.490 |
| AGL02298.1 | AGL03544.1 | Desgi_2900 | Desgi_4301 | Transcriptional activator of acetoin/glycerol metabolism; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. | 0.786 |
| AGL02299.1 | AGL02298.1 | Desgi_2901 | Desgi_2900 | Hypothetical protein. | Transcriptional activator of acetoin/glycerol metabolism; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. | 0.490 |
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