STRINGSTRING
AGL02550.1 AGL02550.1 AGL03894.1 AGL03894.1 AGL00751.1 AGL00751.1 AGL00689.1 AGL00689.1 AGL00641.1 AGL00641.1 AGL00481.1 AGL00481.1 AGL00472.1 AGL00472.1 AGL00324.1 AGL00324.1 nuoK nuoK AGL02132.1 AGL02132.1 AGL02131.1 AGL02131.1 nuoN nuoN AGL01570.1 AGL01570.1 AGL01428.1 AGL01428.1 AGL00901.1 AGL00901.1 AGL00897.1 AGL00897.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGL02550.1Hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: hydrogenase, Fe-only. (672 aa)
AGL03894.1Hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-terminal domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only. (572 aa)
AGL00751.1Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase. (464 aa)
AGL00689.1Coenzyme F420-reducing hydrogenase, alpha subunit; PFAM: Nickel-dependent hydrogenase; Contains selenocysteine; manually curated. (488 aa)
AGL00641.1NADH:ubiquinone oxidoreductase chain G-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (204 aa)
AGL00481.1PFAM: Iron only hydrogenase large subunit, C-terminal domain; Putative Fe-S cluster. (436 aa)
AGL00472.1Hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only. (523 aa)
AGL00324.1PFAM: Iron only hydrogenase large subunit, C-terminal domain. (436 aa)
nuoKNADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (104 aa)
AGL02132.1Proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L. (644 aa)
AGL02131.1PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M. (506 aa)
nuoNProton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (484 aa)
AGL01570.1NADH:ubiquinone oxidoreductase chain G-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain. (306 aa)
AGL01428.1NADH:ubiquinone oxidoreductase chain G-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (204 aa)
AGL00901.1Thiosulfate reductase cytochrome B subunit (membrane anchoring protein); PFAM: Prokaryotic cytochrome b561; TIGRFAM: formate dehydrogenase, gamma subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit. (206 aa)
AGL00897.1Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase. (478 aa)
Your Current Organism:
Desulfallas gibsoniae
NCBI taxonomy Id: 767817
Other names: D. gibsoniae DSM 7213, Desulfallas gibsoniae DSM 7213, Desulfotomaculum gibsoniae DSM 7213, Desulfotomaculum sp. DSM 7213, Desulfotomaculum sp. Groll
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