Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGK99710.1 | spoIIAB | Desgi_0096 | Desgi_2572 | PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.618 |
| AGK99785.1 | AGL02480.1 | Desgi_0172 | Desgi_3120 | Hypothetical protein. | Hypothetical protein. | 0.437 |
| AGK99785.1 | AGL02513.1 | Desgi_0172 | Desgi_3158 | Hypothetical protein. | Hypothetical protein. | 0.459 |
| AGL00761.1 | rny | Desgi_1249 | Desgi_1883 | Putative transcriptional regulator; PFAM: Penicillinase repressor. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.400 |
| AGL01640.1 | csrA | Desgi_2211 | Desgi_2276 | ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.494 |
| AGL01704.1 | csrA | Desgi_2282 | Desgi_2276 | PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.863 |
| AGL02480.1 | AGK99785.1 | Desgi_3120 | Desgi_0172 | Hypothetical protein. | Hypothetical protein. | 0.437 |
| AGL02513.1 | AGK99785.1 | Desgi_3158 | Desgi_0172 | Hypothetical protein. | Hypothetical protein. | 0.459 |
| AGL02534.1 | rny | Desgi_3179 | Desgi_1883 | Putative transcriptional regulator; PFAM: Penicillinase repressor; TIGRFAM: copper transport repressor, CopY/TcrY family. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.400 |
| AGL02556.1 | AGL03831.1 | Desgi_3202 | Desgi_4604 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. | 0.774 |
| AGL03831.1 | AGL02556.1 | Desgi_4604 | Desgi_3202 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. | 0.774 |
| codY | csrA | Desgi_1826 | Desgi_2276 | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.541 |
| codY | lexA | Desgi_1826 | Desgi_1682 | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.402 |
| codY | lexA-2 | Desgi_1826 | Desgi_1950 | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.402 |
| codY | rex | Desgi_1826 | Desgi_2067 | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. | 0.631 |
| codY | rny | Desgi_1826 | Desgi_1883 | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.515 |
| csrA | AGL01640.1 | Desgi_2276 | Desgi_2211 | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | ATPase involved in chromosome partitioning; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. | 0.494 |
| csrA | AGL01704.1 | Desgi_2276 | Desgi_2282 | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM. | 0.863 |
| csrA | codY | Desgi_2276 | Desgi_1826 | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | 0.541 |
| csrA | rny | Desgi_2276 | Desgi_1883 | Carbon storage regulator CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.467 |
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