11 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_0024	ARID domain-containing protein. (1006 aa)
	Malapachy_4156	Snf5-domain-containing protein; Belongs to the universal ribosomal protein uS2 family. (1506 aa)
	Malapachy_0118	Swi snf complex 60 kDa subunit. (544 aa)
	Malapachy_1165	Rsc complex member. (651 aa)
	Malapachy_1238	Swi snf complex protein. (993 aa)
	Malapachy_2300	Rsc complex protein. (592 aa)
	Malapachy_3555	Snf2-family atp dependent chromatin remodeling factor snf21. (1432 aa)
	Malapachy_3359	Uncharacterized protein. (438 aa)
	Malapachy_3883	Uaf30p. (206 aa)
	Malapachy_0835	Uncharacterized protein. (301 aa)
	Malapachy_2615	Irf-2-binding protein celtix-1. (722 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0024	Malapachy_0118	A0A0M8MJ62	A0A0M8MTX8	ARID domain-containing protein.	Swi snf complex 60 kDa subunit.	0.883
Malapachy_0024	Malapachy_0835	A0A0M8MJ62	A0A0M9VPX7	ARID domain-containing protein.	Uncharacterized protein.	0.559
Malapachy_0024	Malapachy_1165	A0A0M8MJ62	A0A0M8MVP0	ARID domain-containing protein.	Rsc complex member.	0.584
Malapachy_0024	Malapachy_1238	A0A0M8MJ62	A0A0M8MVS1	ARID domain-containing protein.	Swi snf complex protein.	0.883
Malapachy_0024	Malapachy_2300	A0A0M8MJ62	A0A0M8MX96	ARID domain-containing protein.	Rsc complex protein.	0.584
Malapachy_0024	Malapachy_3359	A0A0M8MJ62	A0A0M8MZ90	ARID domain-containing protein.	Uncharacterized protein.	0.867
Malapachy_0024	Malapachy_3555	A0A0M8MJ62	A0A0M8MYS8	ARID domain-containing protein.	Snf2-family atp dependent chromatin remodeling factor snf21.	0.930
Malapachy_0024	Malapachy_3883	A0A0M8MJ62	A0A0M9VP96	ARID domain-containing protein.	Uaf30p.	0.533
Malapachy_0024	Malapachy_4156	A0A0M8MJ62	A0A0M8MP34	ARID domain-containing protein.	Snf5-domain-containing protein; Belongs to the universal ribosomal protein uS2 family.	0.957
Malapachy_0118	Malapachy_0024	A0A0M8MTX8	A0A0M8MJ62	Swi snf complex 60 kDa subunit.	ARID domain-containing protein.	0.883
Malapachy_0118	Malapachy_0835	A0A0M8MTX8	A0A0M9VPX7	Swi snf complex 60 kDa subunit.	Uncharacterized protein.	0.947
Malapachy_0118	Malapachy_1165	A0A0M8MTX8	A0A0M8MVP0	Swi snf complex 60 kDa subunit.	Rsc complex member.	0.944
Malapachy_0118	Malapachy_1238	A0A0M8MTX8	A0A0M8MVS1	Swi snf complex 60 kDa subunit.	Swi snf complex protein.	0.996
Malapachy_0118	Malapachy_2300	A0A0M8MTX8	A0A0M8MX96	Swi snf complex 60 kDa subunit.	Rsc complex protein.	0.936
Malapachy_0118	Malapachy_2615	A0A0M8MTX8	A0A0M9VQF3	Swi snf complex 60 kDa subunit.	Irf-2-binding protein celtix-1.	0.965
Malapachy_0118	Malapachy_3359	A0A0M8MTX8	A0A0M8MZ90	Swi snf complex 60 kDa subunit.	Uncharacterized protein.	0.819
Malapachy_0118	Malapachy_3555	A0A0M8MTX8	A0A0M8MYS8	Swi snf complex 60 kDa subunit.	Snf2-family atp dependent chromatin remodeling factor snf21.	0.992
Malapachy_0118	Malapachy_4156	A0A0M8MTX8	A0A0M8MP34	Swi snf complex 60 kDa subunit.	Snf5-domain-containing protein; Belongs to the universal ribosomal protein uS2 family.	0.992
Malapachy_0835	Malapachy_0024	A0A0M9VPX7	A0A0M8MJ62	Uncharacterized protein.	ARID domain-containing protein.	0.559
Malapachy_0835	Malapachy_0118	A0A0M9VPX7	A0A0M8MTX8	Uncharacterized protein.	Swi snf complex 60 kDa subunit.	0.947