11 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_3704	Rna-binding domain-containing protein. (327 aa)
	Malapachy_3966	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (148 aa)
	Malapachy_4197	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	Malapachy_2927	Small nuclear ribonucleoprotein G. (86 aa)
	Malapachy_3110	80 kDa nuclear cap binding protein. (961 aa)
	Malapachy_3435	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	Malapachy_0717	Nuclear cap-binding protein subunit 2. (244 aa)
	Malapachy_1068	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	Malapachy_0331	Sm domain-containing protein. (187 aa)
	Malapachy_0622	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	Malapachy_1073	Small nuclear ribonucleo protein. (79 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0331	Malapachy_0622	A0A0M9VMU8	A0A0M9VPS6	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Malapachy_0331	Malapachy_0717	A0A0M9VMU8	A0A0M8MV37	Sm domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.956
Malapachy_0331	Malapachy_1068	A0A0M9VMU8	A0A0M8MV99	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
Malapachy_0331	Malapachy_1073	A0A0M9VMU8	A0A0M9VQ01	Sm domain-containing protein.	Small nuclear ribonucleo protein.	0.999
Malapachy_0331	Malapachy_2927	A0A0M9VMU8	A0A0M8MQ68	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.997
Malapachy_0331	Malapachy_3110	A0A0M9VMU8	A0A0M8MQP6	Sm domain-containing protein.	80 kDa nuclear cap binding protein.	0.982
Malapachy_0331	Malapachy_3435	A0A0M9VMU8	A0A0M8MSY0	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
Malapachy_0331	Malapachy_3704	A0A0M9VMU8	A0A0M8MLV6	Sm domain-containing protein.	Rna-binding domain-containing protein.	0.987
Malapachy_0331	Malapachy_3966	A0A0M9VMU8	A0A0M8MM78	Sm domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.990
Malapachy_0331	Malapachy_4197	A0A0M9VMU8	A0A0M8MPB0	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
Malapachy_0622	Malapachy_0331	A0A0M9VPS6	A0A0M9VMU8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.999
Malapachy_0622	Malapachy_0717	A0A0M9VPS6	A0A0M8MV37	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Nuclear cap-binding protein subunit 2.	0.995
Malapachy_0622	Malapachy_1068	A0A0M9VPS6	A0A0M8MV99	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
Malapachy_0622	Malapachy_1073	A0A0M9VPS6	A0A0M9VQ01	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleo protein.	0.999
Malapachy_0622	Malapachy_2927	A0A0M9VPS6	A0A0M8MQ68	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
Malapachy_0622	Malapachy_3110	A0A0M9VPS6	A0A0M8MQP6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	80 kDa nuclear cap binding protein.	0.968
Malapachy_0622	Malapachy_3435	A0A0M9VPS6	A0A0M8MSY0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.999
Malapachy_0622	Malapachy_3704	A0A0M9VPS6	A0A0M8MLV6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Rna-binding domain-containing protein.	0.995
Malapachy_0622	Malapachy_3966	A0A0M9VPS6	A0A0M8MM78	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.993
Malapachy_0622	Malapachy_4197	A0A0M9VPS6	A0A0M8MPB0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999