16 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Predicted Interactions

gene neighborhood

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Your Input:
	Malapachy_2927	Small nuclear ribonucleoprotein G. (86 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	Malapachy_4250	Smn domain-containing protein. (246 aa)
	Malapachy_1997	Pre-mrna splicing factor cwc2. (393 aa)
	Malapachy_3966	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (148 aa)
	Malapachy_1750	P-loop containing nucleoside triphosphate hydrolase protein. (990 aa)
	Malapachy_2116	Pre-mrna splicing factor prp1. (925 aa)
	Malapachy_4197	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	Malapachy_4047	Uncharacterized protein. (125 aa)
	Malapachy_2191	Rna-binding protein prp24. (1135 aa)
	Malapachy_3854	Uncharacterized protein. (678 aa)
	Malapachy_3626	Nop domain-containing protein. (550 aa)
	Malapachy_2919	Pre-mrna-processing-splicing factor. (2372 aa)
	Malapachy_0622	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	Malapachy_1073	Small nuclear ribonucleo protein. (79 aa)
	Malapachy_3206	Serine threonine kinase receptor associated protein. (562 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	Malapachy_0622	A0A0M8MK24	A0A0M9VPS6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.979
LSM4	Malapachy_1073	A0A0M8MK24	A0A0M9VQ01	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleo protein.	0.975
LSM4	Malapachy_1750	A0A0M8MK24	A0A0M8MNG0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	P-loop containing nucleoside triphosphate hydrolase protein.	0.947
LSM4	Malapachy_2116	A0A0M8MK24	A0A0M8MP07	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna splicing factor prp1.	0.965
LSM4	Malapachy_2191	A0A0M8MK24	A0A0M8MPL1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Rna-binding protein prp24.	0.987
LSM4	Malapachy_2919	A0A0M8MK24	A0A0M8MYF1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna-processing-splicing factor.	0.952
LSM4	Malapachy_2927	A0A0M8MK24	A0A0M8MQ68	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.967
LSM4	Malapachy_3626	A0A0M8MK24	A0A0M8MXN2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nop domain-containing protein.	0.979
LSM4	Malapachy_3854	A0A0M8MK24	A0A0M8MUM7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.914
LSM4	Malapachy_3966	A0A0M8MK24	A0A0M8MM78	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.816
LSM4	Malapachy_4047	A0A0M8MK24	A0A0M8MPG2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.932
LSM4	Malapachy_4197	A0A0M8MK24	A0A0M8MPB0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.989
Malapachy_0622	LSM4	A0A0M9VPS6	A0A0M8MK24	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.979
Malapachy_0622	Malapachy_1073	A0A0M9VPS6	A0A0M9VQ01	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleo protein.	0.999
Malapachy_0622	Malapachy_1750	A0A0M9VPS6	A0A0M8MNG0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.996
Malapachy_0622	Malapachy_1997	A0A0M9VPS6	A0A0M8MLA4	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mrna splicing factor cwc2.	0.989
Malapachy_0622	Malapachy_2116	A0A0M9VPS6	A0A0M8MP07	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mrna splicing factor prp1.	0.993
Malapachy_0622	Malapachy_2919	A0A0M9VPS6	A0A0M8MYF1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mrna-processing-splicing factor.	0.993
Malapachy_0622	Malapachy_2927	A0A0M9VPS6	A0A0M8MQ68	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
Malapachy_0622	Malapachy_3626	A0A0M9VPS6	A0A0M8MXN2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Nop domain-containing protein.	0.981