14 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_3392	Wd40 repeat-like protein. (504 aa)
	Malapachy_2919	Pre-mrna-processing-splicing factor. (2372 aa)
	Malapachy_2202	Rna-binding domain-containing protein. (196 aa)
	Malapachy_2779	Pre-mrna-splicing factor slt11. (307 aa)
	Malapachy_3833	Rna-binding domain-containing protein. (257 aa)
	Malapachy_2191	Rna-binding protein prp24. (1135 aa)
	Malapachy_1750	P-loop containing nucleoside triphosphate hydrolase protein. (990 aa)
	Malapachy_3966	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (148 aa)
	Malapachy_0856	Nop domain-containing protein. (534 aa)
	Malapachy_1872	Splicing factor 3b subunit 3. (1194 aa)
	Malapachy_1620	L domain-like protein. (243 aa)
	Malapachy_3704	Rna-binding domain-containing protein. (327 aa)
	Malapachy_1997	Pre-mrna splicing factor cwc2. (393 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	Malapachy_1620	A0A0M8MK24	A0A0M9VN76	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	L domain-like protein.	0.922
LSM4	Malapachy_1750	A0A0M8MK24	A0A0M8MNG0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	P-loop containing nucleoside triphosphate hydrolase protein.	0.947
LSM4	Malapachy_1872	A0A0M8MK24	A0A0N0RS59	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3b subunit 3.	0.885
LSM4	Malapachy_2191	A0A0M8MK24	A0A0M8MPL1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Rna-binding protein prp24.	0.987
LSM4	Malapachy_2202	A0A0M8MK24	A0A0M8MXW4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Rna-binding domain-containing protein.	0.785
LSM4	Malapachy_2779	A0A0M8MK24	A0A0M8MRW0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna-splicing factor slt11.	0.556
LSM4	Malapachy_2919	A0A0M8MK24	A0A0M8MYF1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna-processing-splicing factor.	0.952
LSM4	Malapachy_3392	A0A0M8MK24	A0A0M8MYI4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Wd40 repeat-like protein.	0.972
LSM4	Malapachy_3704	A0A0M8MK24	A0A0M8MLV6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Rna-binding domain-containing protein.	0.746
LSM4	Malapachy_3833	A0A0M8MK24	A0A0M8MPY2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Rna-binding domain-containing protein.	0.785
LSM4	Malapachy_3966	A0A0M8MK24	A0A0M8MM78	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.816
Malapachy_0856	Malapachy_1872	A0A0M8MNA9	A0A0N0RS59	Nop domain-containing protein.	Splicing factor 3b subunit 3.	0.450
Malapachy_1620	LSM4	A0A0M9VN76	A0A0M8MK24	L domain-like protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.922
Malapachy_1620	Malapachy_1750	A0A0M9VN76	A0A0M8MNG0	L domain-like protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.988
Malapachy_1620	Malapachy_1872	A0A0M9VN76	A0A0N0RS59	L domain-like protein.	Splicing factor 3b subunit 3.	0.995
Malapachy_1620	Malapachy_1997	A0A0M9VN76	A0A0M8MLA4	L domain-like protein.	Pre-mrna splicing factor cwc2.	0.981
Malapachy_1620	Malapachy_2202	A0A0M9VN76	A0A0M8MXW4	L domain-like protein.	Rna-binding domain-containing protein.	0.995
Malapachy_1620	Malapachy_2779	A0A0M9VN76	A0A0M8MRW0	L domain-like protein.	Pre-mrna-splicing factor slt11.	0.982
Malapachy_1620	Malapachy_2919	A0A0M9VN76	A0A0M8MYF1	L domain-like protein.	Pre-mrna-processing-splicing factor.	0.986
Malapachy_1620	Malapachy_3392	A0A0M9VN76	A0A0M8MYI4	L domain-like protein.	Wd40 repeat-like protein.	0.918