(42 nodes) rRNA binding network (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_0142	Mitochondrial ribosomal protein l11; Belongs to the universal ribosomal protein uL11 family. (146 aa)
	Malapachy_0006	40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family. (148 aa)
	Malapachy_2428	Ribosome biogenesis protein brx1. (300 aa)
	Malapachy_0723	Mitochondrial 54s ribosomal protein 38 34; Belongs to the universal ribosomal protein uL14 family. (135 aa)
	Malapachy_3070	Alpha-l rna-binding motif-containing protein. (182 aa)
	Malapachy_2223	60s ribosomal protein l5. (298 aa)
	Malapachy_0909	30s ribosomal protein s18; Belongs to the bacterial ribosomal protein bS18 family. (208 aa)
	Malapachy_1024	30s ribosomal protein s17. (137 aa)
	Malapachy_3905	U3 snornp-associated protein rrp5. (1504 aa)
	Malapachy_3949	Mrpl16-mitochondrial ribosomal large subunit; Belongs to the universal ribosomal protein uL16 family. (208 aa)
	Malapachy_3992	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (452 aa)
	Malapachy_1937	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	Malapachy_1503	Uncharacterized protein. (862 aa)
	Malapachy_1592	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL23 family. (151 aa)
	Malapachy_1683	Ribosomal protein l6. (229 aa)
	Malapachy_1604	Mitochondrial ribosomal protein s15. (312 aa)
	Malapachy_2803	Brix domain-containing protein. (377 aa)
	Malapachy_3010	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (291 aa)
	Malapachy_3090	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1096 aa)
	Malapachy_3235	60s ribosomal protein l12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	Malapachy_3531	Rrna processing protein rrp7. (355 aa)
	Malapachy_3077	Emg1-protein required for ribosome biogenesis. (385 aa)
	Malapachy_3314	37s ribosomal protein. (217 aa)
	Malapachy_2645	40s ribosomal protein s11; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	Malapachy_0651	Uncharacterized protein. (729 aa)
	Malapachy_0966	Ribosomal protein s7. (184 aa)
	Malapachy_2076	40s ribosomal protein s18; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	Malapachy_1006	Uncharacterized protein. (940 aa)
	Malapachy_1177	40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family. (202 aa)
	Malapachy_1814	40s ribosomal protein s5-1; Belongs to the universal ribosomal protein uS7 family. (206 aa)
	Malapachy_1549	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL14 family. (136 aa)
	Malapachy_3141	60s ribosomal protein l2. (254 aa)
	Malapachy_3634	60s ribosomal protein l9. (193 aa)
	Malapachy_3604	60s ribosomal protein l37. (88 aa)
	Malapachy_2016	Uncharacterized protein. (373 aa)
	Malapachy_0998	Rrna processing protein. (262 aa)
	Malapachy_1767	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	Malapachy_0235	Alpha-l rna-binding motif-containing protein. (411 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (837 aa)
	Malapachy_0794	40s ribosomal protein s13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	Malapachy_0992	Brix domain-containing protein. (431 aa)
	Malapachy_0557	Brix-domain-containing protein. (295 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	Malapachy_0557	A0A0M8MN18	A0A0M8MJR1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix-domain-containing protein.	0.838
ERB1	Malapachy_0723	A0A0M8MN18	A0A0N0RSF0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Mitochondrial 54s ribosomal protein 38 34; Belongs to the universal ribosomal protein uL14 family.	0.822
ERB1	Malapachy_0992	A0A0M8MN18	A0A0M8MLT1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein.	0.961
ERB1	Malapachy_0998	A0A0M8MN18	A0A0M8MNE0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Rrna processing protein.	0.452
ERB1	Malapachy_1006	A0A0M8MN18	A0A0M8MVM0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.908
ERB1	Malapachy_1503	A0A0M8MN18	A0A0M9VNF7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.819
ERB1	Malapachy_1549	A0A0M8MN18	A0A0M8MTB6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL14 family.	0.920
ERB1	Malapachy_1592	A0A0M8MN18	A0A0M9VN99	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL23 family.	0.948
ERB1	Malapachy_1683	A0A0M8MN18	A0A0M9VN79	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein l6.	0.728
ERB1	Malapachy_1767	A0A0M8MN18	A0A0M8MNC0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.954
ERB1	Malapachy_2223	A0A0M8MN18	A0A0M9VQ58	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60s ribosomal protein l5.	0.844
ERB1	Malapachy_2428	A0A0M8MN18	A0A0N0RSI0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein brx1.	0.993
ERB1	Malapachy_2803	A0A0M8MN18	A0A0M9VMQ1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein.	0.983
ERB1	Malapachy_3010	A0A0M8MN18	A0A0M8MZD4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.994
ERB1	Malapachy_3070	A0A0M8MN18	A0A0M9VQV4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Alpha-l rna-binding motif-containing protein.	0.721
ERB1	Malapachy_3077	A0A0M8MN18	A0A0M8MXU9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Emg1-protein required for ribosome biogenesis.	0.469
ERB1	Malapachy_3090	A0A0M8MN18	A0A0M8MYR6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.545
ERB1	Malapachy_3141	A0A0M8MN18	A0A0M8MQF4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60s ribosomal protein l2.	0.750
ERB1	Malapachy_3235	A0A0M8MN18	A0A0M8MYE4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60s ribosomal protein l12; Belongs to the universal ribosomal protein uL11 family.	0.406
ERB1	Malapachy_3531	A0A0M8MN18	A0A0M8MY78	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Rrna processing protein rrp7.	0.517