(20 nodes) snoRNA binding network (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_3154	Wd40 repeat-like protein. (820 aa)
	Malapachy_0724	Wd40 repeat-like protein. (554 aa)
	Malapachy_3589	Nop-domain-containing protein. (518 aa)
	Malapachy_3070	Alpha-l rna-binding motif-containing protein. (182 aa)
	Malapachy_1094	Rna-binding protein nhp2. (201 aa)
	Malapachy_1005	U3 snornp protein. (1018 aa)
	Malapachy_1112	Nop14-like protein. (938 aa)
	Malapachy_1123	H aca ribonucleoprotein complex subunit 3. (62 aa)
	Malapachy_3905	U3 snornp-associated protein rrp5. (1504 aa)
	Malapachy_1926	RNA helicase. (799 aa)
	Malapachy_1574	Wd-repeat-containing protein. (944 aa)
	Malapachy_1347	Ribosome biogenesis protein tsr1. (880 aa)
	Malapachy_2224	Ribosome biogenesis protein bms1. (1001 aa)
	Malapachy_3816	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (654 aa)
	Malapachy_2537	Utp13-u3 snornp protein. (921 aa)
	Malapachy_2689	Uncharacterized protein. (497 aa)
	Malapachy_0635	U3 small nucleolar rna-associated protein 10. (2057 aa)
	Malapachy_0856	Nop domain-containing protein. (534 aa)
	Malapachy_0471	Wd40 repeat-like protein. (588 aa)
	Malapachy_0557	Brix-domain-containing protein. (295 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0471	Malapachy_0557	A0A0M8MM03	A0A0M8MJR1	Wd40 repeat-like protein.	Brix-domain-containing protein.	0.995
Malapachy_0471	Malapachy_0635	A0A0M8MM03	A0A0M8MQB8	Wd40 repeat-like protein.	U3 small nucleolar rna-associated protein 10.	0.997
Malapachy_0471	Malapachy_0724	A0A0M8MM03	A0A0N0RSE0	Wd40 repeat-like protein.	Wd40 repeat-like protein.	0.998
Malapachy_0471	Malapachy_0856	A0A0M8MM03	A0A0M8MNA9	Wd40 repeat-like protein.	Nop domain-containing protein.	0.999
Malapachy_0471	Malapachy_1005	A0A0M8MM03	A0A0M9VPQ3	Wd40 repeat-like protein.	U3 snornp protein.	0.996
Malapachy_0471	Malapachy_1094	A0A0M8MM03	A0A0M9VQ31	Wd40 repeat-like protein.	Rna-binding protein nhp2.	0.919
Malapachy_0471	Malapachy_1112	A0A0M8MM03	A0A0M9VPM9	Wd40 repeat-like protein.	Nop14-like protein.	0.994
Malapachy_0471	Malapachy_1347	A0A0M8MM03	A0A0M9VN66	Wd40 repeat-like protein.	Ribosome biogenesis protein tsr1.	0.782
Malapachy_0471	Malapachy_1574	A0A0M8MM03	A0A0M9VNA4	Wd40 repeat-like protein.	Wd-repeat-containing protein.	0.982
Malapachy_0471	Malapachy_1926	A0A0M8MM03	A0A0M9VNS3	Wd40 repeat-like protein.	RNA helicase.	0.576
Malapachy_0471	Malapachy_2224	A0A0M8MM03	A0A0M8MVI2	Wd40 repeat-like protein.	Ribosome biogenesis protein bms1.	0.993
Malapachy_0471	Malapachy_2537	A0A0M8MM03	A0A0M8MR63	Wd40 repeat-like protein.	Utp13-u3 snornp protein.	0.996
Malapachy_0471	Malapachy_2689	A0A0M8MM03	A0A0M8MR56	Wd40 repeat-like protein.	Uncharacterized protein.	0.998
Malapachy_0471	Malapachy_3070	A0A0M8MM03	A0A0M9VQV4	Wd40 repeat-like protein.	Alpha-l rna-binding motif-containing protein.	0.991
Malapachy_0471	Malapachy_3154	A0A0M8MM03	A0A0M8MQB6	Wd40 repeat-like protein.	Wd40 repeat-like protein.	0.997
Malapachy_0471	Malapachy_3589	A0A0M8MM03	A0A0M9VRC5	Wd40 repeat-like protein.	Nop-domain-containing protein.	0.999
Malapachy_0471	Malapachy_3816	A0A0M8MM03	A0A0M8MU09	Wd40 repeat-like protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.807
Malapachy_0471	Malapachy_3905	A0A0M8MM03	A0A0M9VPI8	Wd40 repeat-like protein.	U3 snornp-associated protein rrp5.	0.991
Malapachy_0557	Malapachy_0471	A0A0M8MJR1	A0A0M8MM03	Brix-domain-containing protein.	Wd40 repeat-like protein.	0.995
Malapachy_0557	Malapachy_0635	A0A0M8MJR1	A0A0M8MQB8	Brix-domain-containing protein.	U3 small nucleolar rna-associated protein 10.	0.994