26 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

Your Input:
	Malapachy_1304	U6 snrna-associated sm-like protein lsm6. (97 aa)
	Malapachy_2927	Small nuclear ribonucleoprotein G. (86 aa)
	Malapachy_3492	Small nuclear ribonucleoprotein. (124 aa)
	Malapachy_4197	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	Malapachy_2116	Pre-mrna splicing factor prp1. (925 aa)
	Malapachy_2078	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (142 aa)
	Malapachy_1750	P-loop containing nucleoside triphosphate hydrolase protein. (990 aa)
	Malapachy_1708	Pre-mrna splicing factor. (235 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	Malapachy_1368	SNRNP27 domain-containing protein. (70 aa)
	Malapachy_1073	Small nuclear ribonucleo protein. (79 aa)
	Malapachy_2907	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	Malapachy_0622	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	Malapachy_3713	Prp3-domain-containing protein. (548 aa)
	Malapachy_0331	Sm domain-containing protein. (187 aa)
	Malapachy_3392	Wd40 repeat-like protein. (504 aa)
	Malapachy_2919	Pre-mrna-processing-splicing factor. (2372 aa)
	Malapachy_3626	Nop domain-containing protein. (550 aa)
	Malapachy_2379	U1-like zn-finger protein. (213 aa)
	Malapachy_2283	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
	Malapachy_1068	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (85 aa)
	Malapachy_0264	Uncharacterized protein. (793 aa)
	Malapachy_0053	Sec63-domain-containing protein. (2161 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A0M8MV83	A0A0M8MK24	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A0M8MV83	A0A0M8MTP2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A0M8MV83	A0A0M9VPK5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM3	Malapachy_0053	A0A0M8MV83	A0A0M8MSN8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sec63-domain-containing protein.	0.992
LSM3	Malapachy_0264	A0A0M8MV83	A0A0M8MT84	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.993
LSM3	Malapachy_0331	A0A0M8MV83	A0A0M9VMU8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.979
LSM3	Malapachy_0622	A0A0M8MV83	A0A0M9VPS6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.993
LSM3	Malapachy_1068	A0A0M8MV83	A0A0M8MV99	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.981
LSM3	Malapachy_1073	A0A0M8MV83	A0A0M9VQ01	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleo protein.	0.979
LSM3	Malapachy_1304	A0A0M8MV83	A0A0M8MS65	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snrna-associated sm-like protein lsm6.	0.999
LSM3	Malapachy_1368	A0A0M8MV83	A0A0M8MHT0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SNRNP27 domain-containing protein.	0.787
LSM3	Malapachy_1750	A0A0M8MV83	A0A0M8MNG0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	P-loop containing nucleoside triphosphate hydrolase protein.	0.990
LSM3	Malapachy_2078	A0A0M8MV83	A0A0M8MNU9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.966
LSM3	Malapachy_2116	A0A0M8MV83	A0A0M8MP07	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna splicing factor prp1.	0.964
LSM3	Malapachy_2283	A0A0M8MV83	A0A0M8MXA8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	Malapachy_2379	A0A0M8MV83	A0A0M8MXJ2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1-like zn-finger protein.	0.952
LSM3	Malapachy_2907	A0A0M8MV83	A0A0M9VR29	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.964
LSM3	Malapachy_2919	A0A0M8MV83	A0A0M8MYF1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mrna-processing-splicing factor.	0.990
LSM3	Malapachy_2927	A0A0M8MV83	A0A0M8MQ68	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.988
LSM3	Malapachy_3392	A0A0M8MV83	A0A0M8MYI4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Wd40 repeat-like protein.	0.993