24 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_3854	Uncharacterized protein. (678 aa)
	Malapachy_1068	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	Malapachy_1219	Formin binding protein 3. (643 aa)
	Malapachy_2278	PSP domain-containing protein. (525 aa)
	Malapachy_2202	Rna-binding domain-containing protein. (196 aa)
	Malapachy_0331	Sm domain-containing protein. (187 aa)
	Malapachy_1212	Pre-mrna splicing factor u2af large chain. (466 aa)
	Malapachy_0622	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	Malapachy_3227	Uncharacterized protein. (597 aa)
	Malapachy_3559	Spliceosome-associated protein sap-49. (215 aa)
	Malapachy_1418	Pre-mrna-splicing factor clf1. (721 aa)
	Malapachy_3704	Rna-binding domain-containing protein. (327 aa)
	Malapachy_2264	P-loop containing nucleoside triphosphate hydrolase protein. (950 aa)
	Malapachy_3966	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (148 aa)
	Malapachy_2536	Splicing factor 3a subunit 2. (257 aa)
	Malapachy_3184	Small nuclear ribonucleoprotein. (265 aa)
	Malapachy_1715	Rna splicing factor prp9. (521 aa)
	Malapachy_2739	Rna recognition motif containing protein. (475 aa)
	Malapachy_4197	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	Malapachy_3492	Small nuclear ribonucleoprotein. (124 aa)
	Malapachy_2927	Small nuclear ribonucleoprotein G. (86 aa)
	Malapachy_2829	Pre-mrna splicing factor. (667 aa)
	Malapachy_2514	Splicing factor 3b subunit 1. (1184 aa)
	Malapachy_0377	Peptide-binding protein. (666 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0331	Malapachy_0377	A0A0M9VMU8	A0A0M8MSB7	Sm domain-containing protein.	Peptide-binding protein.	0.939
Malapachy_0331	Malapachy_0622	A0A0M9VMU8	A0A0M9VPS6	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Malapachy_0331	Malapachy_1068	A0A0M9VMU8	A0A0M8MV99	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
Malapachy_0331	Malapachy_1219	A0A0M9VMU8	A0A0M8MVJ9	Sm domain-containing protein.	Formin binding protein 3.	0.751
Malapachy_0331	Malapachy_1418	A0A0M9VMU8	A0A0M8MJW0	Sm domain-containing protein.	Pre-mrna-splicing factor clf1.	0.981
Malapachy_0331	Malapachy_1715	A0A0M9VMU8	A0A0M8MNM7	Sm domain-containing protein.	Rna splicing factor prp9.	0.989
Malapachy_0331	Malapachy_2202	A0A0M9VMU8	A0A0M8MXW4	Sm domain-containing protein.	Rna-binding domain-containing protein.	0.993
Malapachy_0331	Malapachy_2264	A0A0M9VMU8	A0A0M8MM75	Sm domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.954
Malapachy_0331	Malapachy_2278	A0A0M9VMU8	A0A0M8MVN6	Sm domain-containing protein.	PSP domain-containing protein.	0.987
Malapachy_0331	Malapachy_2514	A0A0M9VMU8	A0A0M8MSA3	Sm domain-containing protein.	Splicing factor 3b subunit 1.	0.956
Malapachy_0331	Malapachy_2536	A0A0M9VMU8	A0A0M8MNJ5	Sm domain-containing protein.	Splicing factor 3a subunit 2.	0.988
Malapachy_0331	Malapachy_2739	A0A0M9VMU8	A0A0M8MP52	Sm domain-containing protein.	Rna recognition motif containing protein.	0.921
Malapachy_0331	Malapachy_2829	A0A0M9VMU8	A0A0M8MQW1	Sm domain-containing protein.	Pre-mrna splicing factor.	0.989
Malapachy_0331	Malapachy_2927	A0A0M9VMU8	A0A0M8MQ68	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.997
Malapachy_0331	Malapachy_3184	A0A0M9VMU8	A0A0M8MNM2	Sm domain-containing protein.	Small nuclear ribonucleoprotein.	0.917
Malapachy_0331	Malapachy_3227	A0A0M9VMU8	A0A0M9VR12	Sm domain-containing protein.	Uncharacterized protein.	0.721
Malapachy_0331	Malapachy_3492	A0A0M9VMU8	A0A0M8MPS9	Sm domain-containing protein.	Small nuclear ribonucleoprotein.	0.928
Malapachy_0331	Malapachy_3559	A0A0M9VMU8	A0A0M9VR55	Sm domain-containing protein.	Spliceosome-associated protein sap-49.	0.991
Malapachy_0331	Malapachy_3704	A0A0M9VMU8	A0A0M8MLV6	Sm domain-containing protein.	Rna-binding domain-containing protein.	0.987
Malapachy_0331	Malapachy_3854	A0A0M9VMU8	A0A0M8MUM7	Sm domain-containing protein.	Uncharacterized protein.	0.892