24 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_0110	Ubiquitin-conjugating enzyme9; Belongs to the ubiquitin-conjugating enzyme family. (145 aa)
	Malapachy_0302	Uncharacterized protein. (1889 aa)
	Malapachy_0069	Essential component of the nuclear pore which mediates nuclear import and export. (721 aa)
	Malapachy_0303	Methyltransferase type 11. (1175 aa)
	Malapachy_0696	Nucleoprotein tpr. (1696 aa)
	Malapachy_1008	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (772 aa)
	Malapachy_0872	Ran-specific gtpase-activating protein 1. (197 aa)
	Malapachy_2579	Small ubiquitin-related modifier. (93 aa)
	Malapachy_3561	Nuclear pore protein. (904 aa)
	Malapachy_2010	RanBD1 domain-containing protein. (868 aa)
	Malapachy_1854	Nucleoporin. (1880 aa)
	Malapachy_1047	Zn-finger transcription factor. (529 aa)
	Malapachy_3680	Essential component of the nuclear pore which mediates nuclear import and export. (1229 aa)
	Malapachy_3522	Nucleoporin. (1953 aa)
	Malapachy_1400	Yrb2-ran-gtpase-binding protein involved in nuclear protein export. (360 aa)
	Malapachy_1552	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (698 aa)
	Malapachy_0266	Uncharacterized protein. (629 aa)
	Malapachy_1508	Nuclear pore protein. (549 aa)
	Malapachy_0149	Fog: e3 ubiquitin ligase. (261 aa)
	Malapachy_1003	Nuclear pore protein. (1319 aa)
	Malapachy_0901	Nuclear pore complex protein. (783 aa)
	Malapachy_0842	Uncharacterized protein. (1344 aa)
	Malapachy_3668	Wd40 repeat-like protein. (417 aa)
	Malapachy_3582	Nuclear pore protein. (461 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0069	Malapachy_0110	A0A0M8MKG3	A0A0M9VNN3	Essential component of the nuclear pore which mediates nuclear import and export.	Ubiquitin-conjugating enzyme9; Belongs to the ubiquitin-conjugating enzyme family.	0.981
Malapachy_0069	Malapachy_0266	A0A0M8MKG3	A0A0M9VNF5	Essential component of the nuclear pore which mediates nuclear import and export.	Uncharacterized protein.	0.995
Malapachy_0069	Malapachy_0302	A0A0M8MKG3	A0A0M8MHA7	Essential component of the nuclear pore which mediates nuclear import and export.	Uncharacterized protein.	0.994
Malapachy_0069	Malapachy_0303	A0A0M8MKG3	A0A0M8MLD1	Essential component of the nuclear pore which mediates nuclear import and export.	Methyltransferase type 11.	0.999
Malapachy_0069	Malapachy_0696	A0A0M8MKG3	A0A0M8MLT7	Essential component of the nuclear pore which mediates nuclear import and export.	Nucleoprotein tpr.	0.998
Malapachy_0069	Malapachy_0842	A0A0M8MKG3	A0A0N0RSH8	Essential component of the nuclear pore which mediates nuclear import and export.	Uncharacterized protein.	0.998
Malapachy_0069	Malapachy_0872	A0A0M8MKG3	A0A0M8MNH7	Essential component of the nuclear pore which mediates nuclear import and export.	Ran-specific gtpase-activating protein 1.	0.999
Malapachy_0069	Malapachy_1003	A0A0M8MKG3	A0A0M9VPP6	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore protein.	0.999
Malapachy_0069	Malapachy_1008	A0A0M8MKG3	A0A0M8MMQ2	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
Malapachy_0069	Malapachy_1400	A0A0M8MKG3	A0A0M9VMW9	Essential component of the nuclear pore which mediates nuclear import and export.	Yrb2-ran-gtpase-binding protein involved in nuclear protein export.	0.999
Malapachy_0069	Malapachy_1508	A0A0M8MKG3	A0A0M9VNJ9	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore protein.	0.999
Malapachy_0069	Malapachy_1552	A0A0M8MKG3	A0A0M9VNB5	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
Malapachy_0069	Malapachy_1854	A0A0M8MKG3	A0A0M8MUI0	Essential component of the nuclear pore which mediates nuclear import and export.	Nucleoporin.	0.999
Malapachy_0069	Malapachy_2010	A0A0M8MKG3	A0A0M8MU43	Essential component of the nuclear pore which mediates nuclear import and export.	RanBD1 domain-containing protein.	0.996
Malapachy_0069	Malapachy_2579	A0A0M8MKG3	A0A0M8MPD5	Essential component of the nuclear pore which mediates nuclear import and export.	Small ubiquitin-related modifier.	0.989
Malapachy_0069	Malapachy_3522	A0A0M8MKG3	A0A0M8MYQ0	Essential component of the nuclear pore which mediates nuclear import and export.	Nucleoporin.	0.999
Malapachy_0069	Malapachy_3561	A0A0M8MKG3	A0A0M8MTH6	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore protein.	0.999
Malapachy_0069	Malapachy_3582	A0A0M8MKG3	A0A0N0RSR9	Essential component of the nuclear pore which mediates nuclear import and export.	Nuclear pore protein.	0.999
Malapachy_0069	Malapachy_3680	A0A0M8MKG3	A0A0M8MXW5	Essential component of the nuclear pore which mediates nuclear import and export.	Essential component of the nuclear pore which mediates nuclear import and export.	0.996
Malapachy_0110	Malapachy_0069	A0A0M9VNN3	A0A0M8MKG3	Ubiquitin-conjugating enzyme9; Belongs to the ubiquitin-conjugating enzyme family.	Essential component of the nuclear pore which mediates nuclear import and export.	0.981