32 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_3092	Insert subdomain of rna polymerase alpha subunit. (331 aa)
	Malapachy_0503	Fusca protein fus6. (425 aa)
	Malapachy_2007	Ubiquitin domain containing protein. (144 aa)
	Malapachy_1256	Tfb1-subunit of rna polymerase ii transcription initiation factor tfiih. (580 aa)
	Malapachy_2924	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (513 aa)
	Malapachy_3695	Rpb4-16 kd subunit of dna-directed rna polymerase ii. (162 aa)
	Malapachy_2282	Rpb5 subunit of dna-directed rna polymerase. (207 aa)
	Malapachy_4214	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	Malapachy_4126	Cop9 signalosome complex subunit 7-like protein. (153 aa)
	Malapachy_4095	Cdk-activating kinase assembly factor. (350 aa)
	Malapachy_1882	Rpo26-18kd subunit of dna-directed rna polymerases iii. (146 aa)
	Malapachy_1287	Dna repair helicase rad25. (748 aa)
	Malapachy_0349	Cop9 signalosome complex subunit 5. (355 aa)
	Malapachy_3654	Peptidyl-prolyl cis-trans isomerase e. (120 aa)
	Malapachy_3057	Pci-domain-containing protein. (1097 aa)
	Malapachy_0804	Transcription factor tfb4. (353 aa)
	Malapachy_0739	Dna repair helicase. (836 aa)
	Malapachy_1852	Uncharacterized protein. (235 aa)
	Malapachy_0179	Cullin 4a; Belongs to the cullin family. (608 aa)
	Malapachy_3385	Dna-directed rna polymerase ii. (163 aa)
	Malapachy_0518	Cop9 signalosome complex subunit 4. (404 aa)
	Malapachy_1182	Cmgc cdk cdk7 protein kinase; Belongs to the protein kinase superfamily. (370 aa)
	Malapachy_2371	Cyclin-like protein; Belongs to the cyclin family. (436 aa)
	Malapachy_1201	Rna polymerase ii subunit. (155 aa)
	Malapachy_2432	Dna-directed rna polymerase subunit. (73 aa)
	Malapachy_1226	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1770 aa)
	Malapachy_0083	Cop9 signalosome complex subunit 3-like protein. (468 aa)
	Malapachy_3887	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1197 aa)
	Malapachy_0234	Rpc10-dna-directed rna polymerases iii kd subunit. (64 aa)
	Malapachy_3622	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (124 aa)
	Malapachy_2190	Uv-damaged dna-binding protein. (1159 aa)
	Malapachy_2918	E3 ubiquitin-protein ligase rbx1. (103 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0083	Malapachy_0179	A0A0M8MKH8	A0A0M8MTF8	Cop9 signalosome complex subunit 3-like protein.	Cullin 4a; Belongs to the cullin family.	0.877
Malapachy_0083	Malapachy_0234	A0A0M8MKH8	A0A0M8MJ33	Cop9 signalosome complex subunit 3-like protein.	Rpc10-dna-directed rna polymerases iii kd subunit.	0.622
Malapachy_0083	Malapachy_0349	A0A0M8MKH8	A0A0M9VMU0	Cop9 signalosome complex subunit 3-like protein.	Cop9 signalosome complex subunit 5.	0.999
Malapachy_0083	Malapachy_0503	A0A0M8MKH8	A0A0N0RRX6	Cop9 signalosome complex subunit 3-like protein.	Fusca protein fus6.	0.999
Malapachy_0083	Malapachy_0518	A0A0M8MKH8	A0A0M8MSS2	Cop9 signalosome complex subunit 3-like protein.	Cop9 signalosome complex subunit 4.	0.999
Malapachy_0083	Malapachy_1201	A0A0M8MKH8	A0A0M8MML3	Cop9 signalosome complex subunit 3-like protein.	Rna polymerase ii subunit.	0.624
Malapachy_0083	Malapachy_1226	A0A0M8MKH8	A0A0M8MKU1	Cop9 signalosome complex subunit 3-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.654
Malapachy_0083	Malapachy_2007	A0A0M8MKH8	A0A0N0RS39	Cop9 signalosome complex subunit 3-like protein.	Ubiquitin domain containing protein.	0.733
Malapachy_0083	Malapachy_2190	A0A0M8MKH8	A0A0N0RSK7	Cop9 signalosome complex subunit 3-like protein.	Uv-damaged dna-binding protein.	0.871
Malapachy_0083	Malapachy_2282	A0A0M8MKH8	A0A0M9VQD3	Cop9 signalosome complex subunit 3-like protein.	Rpb5 subunit of dna-directed rna polymerase.	0.637
Malapachy_0083	Malapachy_2371	A0A0M8MKH8	A0A0M8MMY8	Cop9 signalosome complex subunit 3-like protein.	Cyclin-like protein; Belongs to the cyclin family.	0.630
Malapachy_0083	Malapachy_2432	A0A0M8MKH8	A0A0M8MMH0	Cop9 signalosome complex subunit 3-like protein.	Dna-directed rna polymerase subunit.	0.621
Malapachy_0083	Malapachy_2918	A0A0M8MKH8	A0A0N0RSQ1	Cop9 signalosome complex subunit 3-like protein.	E3 ubiquitin-protein ligase rbx1.	0.900
Malapachy_0083	Malapachy_3057	A0A0M8MKH8	A0A0M8MY11	Cop9 signalosome complex subunit 3-like protein.	Pci-domain-containing protein.	0.999
Malapachy_0083	Malapachy_3092	A0A0M8MKH8	A0A0M9VR62	Cop9 signalosome complex subunit 3-like protein.	Insert subdomain of rna polymerase alpha subunit.	0.647
Malapachy_0083	Malapachy_3622	A0A0M8MKH8	A0A0M9VR28	Cop9 signalosome complex subunit 3-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.615
Malapachy_0083	Malapachy_3887	A0A0M8MKH8	A0A0M8MK92	Cop9 signalosome complex subunit 3-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.636
Malapachy_0083	Malapachy_4126	A0A0M8MKH8	A0A0M9VPD8	Cop9 signalosome complex subunit 3-like protein.	Cop9 signalosome complex subunit 7-like protein.	0.998
Malapachy_0083	Malapachy_4214	A0A0M8MKH8	A0A0M9VPN4	Cop9 signalosome complex subunit 3-like protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.624
Malapachy_0179	Malapachy_0083	A0A0M8MTF8	A0A0M8MKH8	Cullin 4a; Belongs to the cullin family.	Cop9 signalosome complex subunit 3-like protein.	0.877