25 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_2338	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (635 aa)
	Malapachy_4121	Rpc53-47 kd subunit of dna-directed rna polymerase iii. (384 aa)
	Malapachy_2862	Uncharacterized protein. (455 aa)
	Malapachy_0004	Polymerase iii polypeptide h. (233 aa)
	Malapachy_2413	Uncharacterized protein. (86 aa)
	Malapachy_2350	Transcription factor tfiiic complex subunit sfc6. (542 aa)
	Malapachy_2432	Dna-directed rna polymerase subunit. (73 aa)
	Malapachy_1063	Dna-directed rna polymerase iii subunit rpc5. (273 aa)
	Malapachy_1902	HTH myb-type domain-containing protein. (501 aa)
	Malapachy_0022	Dna glycosylase. (357 aa)
	Malapachy_0234	Rpc10-dna-directed rna polymerases iii kd subunit. (64 aa)
	Malapachy_3452	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1148 aa)
	Malapachy_0152	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1924 aa)
	Malapachy_2575	Transcription factor tfiiib complex subunit brf1. (602 aa)
	Malapachy_2282	Rpb5 subunit of dna-directed rna polymerase. (207 aa)
	Malapachy_2313	Tbp-domain-containing protein. (249 aa)
	Malapachy_2465	Rpc34-dna-directed rna polymerase 34 kd subunit. (439 aa)
	Malapachy_0880	Tpr-like protein. (1041 aa)
	Malapachy_1109	TFIIIC_sub6 domain-containing protein. (172 aa)
	Malapachy_0886	Uncharacterized protein. (549 aa)
	Malapachy_4214	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	Malapachy_0896	Dna-directed rna polymerase iii subunit rpc9. (213 aa)
	Malapachy_1882	Rpo26-18kd subunit of dna-directed rna polymerases iii. (146 aa)
	Malapachy_1853	Delta-aminolevulinic acid dehydratase. (74 aa)
	Malapachy_3383	Rpc40-40 kd subunit of dna-directed rna polymerases i and iii. (331 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0004	Malapachy_0152	A0A0M8MSJ6	A0A0N0RS45	Polymerase iii polypeptide h.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
Malapachy_0004	Malapachy_0234	A0A0M8MSJ6	A0A0M8MJ33	Polymerase iii polypeptide h.	Rpc10-dna-directed rna polymerases iii kd subunit.	0.998
Malapachy_0004	Malapachy_0880	A0A0M8MSJ6	A0A0M9VPP7	Polymerase iii polypeptide h.	Tpr-like protein.	0.624
Malapachy_0004	Malapachy_0886	A0A0M8MSJ6	A0A0M9VPN9	Polymerase iii polypeptide h.	Uncharacterized protein.	0.623
Malapachy_0004	Malapachy_0896	A0A0M8MSJ6	A0A0M9VPN1	Polymerase iii polypeptide h.	Dna-directed rna polymerase iii subunit rpc9.	0.999
Malapachy_0004	Malapachy_1063	A0A0M8MSJ6	A0A0M8MLQ8	Polymerase iii polypeptide h.	Dna-directed rna polymerase iii subunit rpc5.	0.996
Malapachy_0004	Malapachy_1853	A0A0M8MSJ6	A0A0M9VNY9	Polymerase iii polypeptide h.	Delta-aminolevulinic acid dehydratase.	0.993
Malapachy_0004	Malapachy_1882	A0A0M8MSJ6	A0A0M9VNZ5	Polymerase iii polypeptide h.	Rpo26-18kd subunit of dna-directed rna polymerases iii.	0.997
Malapachy_0004	Malapachy_1902	A0A0M8MSJ6	A0A0M8ML31	Polymerase iii polypeptide h.	HTH myb-type domain-containing protein.	0.915
Malapachy_0004	Malapachy_2282	A0A0M8MSJ6	A0A0M9VQD3	Polymerase iii polypeptide h.	Rpb5 subunit of dna-directed rna polymerase.	0.998
Malapachy_0004	Malapachy_2313	A0A0M8MSJ6	A0A0M9VQA4	Polymerase iii polypeptide h.	Tbp-domain-containing protein.	0.876
Malapachy_0004	Malapachy_2338	A0A0M8MSJ6	A0A0M8MWW3	Polymerase iii polypeptide h.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Malapachy_0004	Malapachy_2350	A0A0M8MSJ6	A0A0M8MNI3	Polymerase iii polypeptide h.	Transcription factor tfiiic complex subunit sfc6.	0.601
Malapachy_0004	Malapachy_2432	A0A0M8MSJ6	A0A0M8MMH0	Polymerase iii polypeptide h.	Dna-directed rna polymerase subunit.	0.996
Malapachy_0004	Malapachy_2465	A0A0M8MSJ6	A0A0M9VQA1	Polymerase iii polypeptide h.	Rpc34-dna-directed rna polymerase 34 kd subunit.	0.998
Malapachy_0004	Malapachy_2575	A0A0M8MSJ6	A0A0M9VQK6	Polymerase iii polypeptide h.	Transcription factor tfiiib complex subunit brf1.	0.895
Malapachy_0004	Malapachy_2862	A0A0M8MSJ6	A0A0M8MHI1	Polymerase iii polypeptide h.	Uncharacterized protein.	0.841
Malapachy_0004	Malapachy_3383	A0A0M8MSJ6	A0A0M8MYW3	Polymerase iii polypeptide h.	Rpc40-40 kd subunit of dna-directed rna polymerases i and iii.	0.996
Malapachy_0004	Malapachy_3452	A0A0M8MSJ6	A0A0N0RSM7	Polymerase iii polypeptide h.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
Malapachy_0004	Malapachy_4121	A0A0M8MSJ6	A0A0M8MV21	Polymerase iii polypeptide h.	Rpc53-47 kd subunit of dna-directed rna polymerase iii.	0.997