47 items (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Malapachy_2543	DNA ligase. (711 aa)
	Malapachy_0386	Dna polymerase subunit cdc27. (240 aa)
	Malapachy_2000	P-loop containing nucleoside triphosphate hydrolase protein. (341 aa)
	Malapachy_3778	P-loop containing nucleoside triphosphate hydrolase protein. (333 aa)
	Malapachy_2371	Cyclin-like protein; Belongs to the cyclin family. (436 aa)
	Malapachy_1066	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (617 aa)
	Malapachy_1101	Chl1-protein of the deah box family. (873 aa)
	Malapachy_0756	Single-stranded dna binding protein 12k chain. (111 aa)
	Malapachy_2765	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2216 aa)
	Malapachy_1182	Cmgc cdk cdk7 protein kinase; Belongs to the protein kinase superfamily. (370 aa)
	Malapachy_2878	Rad2-structure-specific nuclease of the nucleotide excision repairosome. (997 aa)
	Malapachy_0359	Dna replication factor c large subunit. (743 aa)
	Malapachy_2334	Vezatin domain-containing protein. (763 aa)
	Malapachy_2311	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (562 aa)
	Malapachy_1463	Uncharacterized protein. (287 aa)
	Malapachy_0367	Uncharacterized protein. (226 aa)
	Malapachy_1430	Udp-galactopyranose mutase. (503 aa)
	Malapachy_0179	Cullin 4a; Belongs to the cullin family. (608 aa)
	Malapachy_0058	P-loop containing nucleoside triphosphate hydrolase protein. (1075 aa)
	Malapachy_0668	Dna polymerase small subunit. (462 aa)
	Malapachy_0979	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
	Malapachy_0739	Dna repair helicase. (836 aa)
	Malapachy_0804	Transcription factor tfb4. (353 aa)
	Malapachy_2513	Uncharacterized protein. (176 aa)
	Malapachy_2621	Dna polymerase delta subunit 4. (170 aa)
	Malapachy_2630	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (178 aa)
	Malapachy_3345	Dna repair protein. (316 aa)
	Malapachy_2882	Uncharacterized protein. (279 aa)
	Malapachy_1365	DNA polymerase. (1039 aa)
	Malapachy_1287	Dna repair helicase rad25. (748 aa)
	Malapachy_0507	Dna ligase. (193 aa)
	Malapachy_0574	Rad4-domain-containing protein. (821 aa)
	Malapachy_0067	Dna helicase i. (780 aa)
	Malapachy_0051	P-loop containing nucleoside triphosphate hydrolase protein. (353 aa)
	Malapachy_4095	Cdk-activating kinase assembly factor. (350 aa)
	Malapachy_1160	Histone-fold-containing protein. (224 aa)
	Malapachy_1044	Zds_C domain-containing protein. (773 aa)
	Malapachy_2454	Dna polymerase epsilon p12 subunit (Dna polymerase epsilon subunit 4). (226 aa)
	Malapachy_3240	Rfa2-dna replication factor 36 kDa subunit. (246 aa)
	Malapachy_2924	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (513 aa)
	Malapachy_3144	P-loop containing nucleoside triphosphate hydrolase protein. (482 aa)
	Malapachy_3111	P-loop containing nucleoside triphosphate hydrolase protein. (784 aa)
	Malapachy_1256	Tfb1-subunit of rna polymerase ii transcription initiation factor tfiih. (580 aa)
	Malapachy_2708	Dna repair protein. (826 aa)
	Malapachy_2190	Uv-damaged dna-binding protein. (1159 aa)
	Malapachy_3688	DNA_LIGASE_A3 domain-containing protein. (476 aa)
	Malapachy_2918	E3 ubiquitin-protein ligase rbx1. (103 aa)

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0051	Malapachy_0058	A0A0M9VNU9	A0A0M8MTZ0	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.821
Malapachy_0051	Malapachy_0179	A0A0M9VNU9	A0A0M8MTF8	P-loop containing nucleoside triphosphate hydrolase protein.	Cullin 4a; Belongs to the cullin family.	0.614
Malapachy_0051	Malapachy_0359	A0A0M9VNU9	A0A0M8MR38	P-loop containing nucleoside triphosphate hydrolase protein.	Dna replication factor c large subunit.	0.999
Malapachy_0051	Malapachy_0386	A0A0M9VNU9	A0A0M8MHN2	P-loop containing nucleoside triphosphate hydrolase protein.	Dna polymerase subunit cdc27.	0.653
Malapachy_0051	Malapachy_0507	A0A0M9VNU9	A0A0M9VN21	P-loop containing nucleoside triphosphate hydrolase protein.	Dna ligase.	0.687
Malapachy_0051	Malapachy_0668	A0A0M9VNU9	A0A0M8MUH9	P-loop containing nucleoside triphosphate hydrolase protein.	Dna polymerase small subunit.	0.795
Malapachy_0051	Malapachy_0739	A0A0M9VNU9	A0A0M8MVA6	P-loop containing nucleoside triphosphate hydrolase protein.	Dna repair helicase.	0.641
Malapachy_0051	Malapachy_0756	A0A0M9VNU9	A0A0M8MQE6	P-loop containing nucleoside triphosphate hydrolase protein.	Single-stranded dna binding protein 12k chain.	0.450
Malapachy_0051	Malapachy_0979	A0A0M9VNU9	A0A0M8MUZ9	P-loop containing nucleoside triphosphate hydrolase protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.971
Malapachy_0051	Malapachy_1044	A0A0M9VNU9	A0A0M9VPX5	P-loop containing nucleoside triphosphate hydrolase protein.	Zds_C domain-containing protein.	0.450
Malapachy_0051	Malapachy_1066	A0A0M9VNU9	A0A0M8MN58	P-loop containing nucleoside triphosphate hydrolase protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.828
Malapachy_0051	Malapachy_1101	A0A0M9VNU9	A0A0M8MQ95	P-loop containing nucleoside triphosphate hydrolase protein.	Chl1-protein of the deah box family.	0.679
Malapachy_0051	Malapachy_1160	A0A0M9VNU9	A0A0M9VPR1	P-loop containing nucleoside triphosphate hydrolase protein.	Histone-fold-containing protein.	0.727
Malapachy_0051	Malapachy_1256	A0A0M9VNU9	A0A0N0RSG1	P-loop containing nucleoside triphosphate hydrolase protein.	Tfb1-subunit of rna polymerase ii transcription initiation factor tfiih.	0.579
Malapachy_0051	Malapachy_1287	A0A0M9VNU9	A0A0M9VN01	P-loop containing nucleoside triphosphate hydrolase protein.	Dna repair helicase rad25.	0.625
Malapachy_0051	Malapachy_1365	A0A0M9VNU9	A0A0M9VMX6	P-loop containing nucleoside triphosphate hydrolase protein.	DNA polymerase.	0.836
Malapachy_0051	Malapachy_1430	A0A0M9VNU9	A0A0M8MT71	P-loop containing nucleoside triphosphate hydrolase protein.	Udp-galactopyranose mutase.	0.450
Malapachy_0051	Malapachy_2000	A0A0M9VNU9	A0A0M8MJF2	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.999
Malapachy_0051	Malapachy_2190	A0A0M9VNU9	A0A0N0RSK7	P-loop containing nucleoside triphosphate hydrolase protein.	Uv-damaged dna-binding protein.	0.634
Malapachy_0051	Malapachy_2311	A0A0M9VNU9	A0A0M8MRE4	P-loop containing nucleoside triphosphate hydrolase protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.836