32 items (Prevotella bryantii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nadB	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (529 aa)
	purB	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (448 aa)
	purA	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (425 aa)
	pyrI	Aspartate carbamoyltransferase regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase. (151 aa)
	pyrB	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (318 aa)
	aspA	Aspartate ammonia-lyase. (471 aa)
	SEA05996.1	L-asparaginase; Belongs to the asparaginase 1 family. (350 aa)
	ansA	L-asparaginase. (346 aa)
	glmS	Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (616 aa)
	SEA19568.1	Amidophosphoribosyltransferase. (628 aa)
	carA	Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. (359 aa)
	carB	Carbamoyl-phosphate synthase large subunit. (1075 aa)
	SEA17155.1	Glutamate synthase (NADPH/NADH) small chain. (453 aa)
	SEA17455.1	Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (444 aa)
	argH	Argininosuccinate lyase. (445 aa)
	glnA	Glutamine synthetase. (729 aa)
	glnA-2	Glutamine synthetase. (729 aa)
	asnB	Asparagine synthase (glutamine-hydrolysing). (565 aa)
	SEA28156.1	Glutamate synthase (NADH) small subunit. (478 aa)
	gltB	Glutamate synthase (NADH) large subunit. (1493 aa)
	SEA33661.1	Argininosuccinate synthase. (400 aa)
	SEA46237.1	Hypothetical protein. (69 aa)
	SEA46416.1	ORF6N domain-containing protein. (125 aa)
	gltD	Glutamate synthase (NADPH/NADH) small chain. (782 aa)
	carB-2	Carbamoyl-phosphate synthase large subunit. (1076 aa)
	SEA53488.1	Aspartate aminotransferase. (397 aa)
	SEA62880.1	Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. (474 aa)
	glmS-2	Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (614 aa)
	SEA62543.1	Predicted amidohydrolase. (252 aa)
	SEA65653.1	Hypothetical protein. (143 aa)
	asnA	Aspartate-ammonia ligase. (345 aa)
	SDZ79839.1	Aspartate aminotransferase. (400 aa)

Your Current Organism:

Prevotella bryantii

NCBI taxonomy Id: 77095
Other names: Bacteroides (Prevotella) ruminicola subsp. brevis biovar 3, CIP 105474, DSM 11371, P. bryantii, strain B14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ79839.1	SEA05996.1	SAMN05216455_101304	SAMN05216455_10328	Aspartate aminotransferase.	L-asparaginase; Belongs to the asparaginase 1 family.	0.655
SDZ79839.1	SEA17155.1	SAMN05216455_101304	SAMN05216455_10470	Aspartate aminotransferase.	Glutamate synthase (NADPH/NADH) small chain.	0.823
SDZ79839.1	SEA17455.1	SAMN05216455_101304	SAMN05216455_10485	Aspartate aminotransferase.	Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.882
SDZ79839.1	SEA28156.1	SAMN05216455_101304	SAMN05216455_10598	Aspartate aminotransferase.	Glutamate synthase (NADH) small subunit.	0.655
SDZ79839.1	SEA33661.1	SAMN05216455_101304	SAMN05216455_1064	Aspartate aminotransferase.	Argininosuccinate synthase.	0.850
SDZ79839.1	SEA53488.1	SAMN05216455_101304	SAMN05216455_108117	Aspartate aminotransferase.	Aspartate aminotransferase.	0.896
SDZ79839.1	SEA62543.1	SAMN05216455_101304	SAMN05216455_1114	Aspartate aminotransferase.	Predicted amidohydrolase.	0.878
SDZ79839.1	ansA	SAMN05216455_101304	SAMN05216455_104167	Aspartate aminotransferase.	L-asparaginase.	0.876
SDZ79839.1	asnA	SAMN05216455_101304	SAMN05216455_101506	Aspartate aminotransferase.	Aspartate-ammonia ligase.	0.875
SDZ79839.1	asnB	SAMN05216455_101304	SAMN05216455_10596	Aspartate aminotransferase.	Asparagine synthase (glutamine-hydrolysing).	0.847
SDZ79839.1	aspA	SAMN05216455_101304	SAMN05216455_10326	Aspartate aminotransferase.	Aspartate ammonia-lyase.	0.937
SDZ79839.1	gltB	SAMN05216455_101304	SAMN05216455_10599	Aspartate aminotransferase.	Glutamate synthase (NADH) large subunit.	0.870
SDZ79839.1	gltD	SAMN05216455_101304	SAMN05216455_101154	Aspartate aminotransferase.	Glutamate synthase (NADPH/NADH) small chain.	0.890
SDZ79839.1	nadB	SAMN05216455_101304	SAMN05216455_101635	Aspartate aminotransferase.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.873
SDZ79839.1	purA	SAMN05216455_101304	SAMN05216455_10187	Aspartate aminotransferase.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.881
SDZ79839.1	pyrB	SAMN05216455_101304	SAMN05216455_102297	Aspartate aminotransferase.	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.894
SEA05996.1	SDZ79839.1	SAMN05216455_10328	SAMN05216455_101304	L-asparaginase; Belongs to the asparaginase 1 family.	Aspartate aminotransferase.	0.655
SEA05996.1	SEA33661.1	SAMN05216455_10328	SAMN05216455_1064	L-asparaginase; Belongs to the asparaginase 1 family.	Argininosuccinate synthase.	0.501
SEA05996.1	SEA53488.1	SAMN05216455_10328	SAMN05216455_108117	L-asparaginase; Belongs to the asparaginase 1 family.	Aspartate aminotransferase.	0.655
SEA05996.1	ansA	SAMN05216455_10328	SAMN05216455_104167	L-asparaginase; Belongs to the asparaginase 1 family.	L-asparaginase.	0.825