6 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_03164	Uncharacterized protein. (105 aa)
	D910_04340	Uncharacterized protein. (142 aa)
	D910_11566	Uncharacterized protein. (161 aa)
	D910_05674	KxDL domain-containing protein. (164 aa)
	D910_09502	Uncharacterized protein. (270 aa)
	D910_07584	Uncharacterized protein. (224 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_03164	D910_04340	N6TV91	N6U3X1	Uncharacterized protein.	Uncharacterized protein.	0.762
D910_03164	D910_05674	N6TV91	U4U5E6	Uncharacterized protein.	KxDL domain-containing protein.	0.724
D910_03164	D910_07584	N6TV91	U4UHZ2	Uncharacterized protein.	Uncharacterized protein.	0.767
D910_03164	D910_09502	N6TV91	U4UGM9	Uncharacterized protein.	Uncharacterized protein.	0.768
D910_03164	D910_11566	N6TV91	N6U6H3	Uncharacterized protein.	Uncharacterized protein.	0.696
D910_04340	D910_03164	N6U3X1	N6TV91	Uncharacterized protein.	Uncharacterized protein.	0.762
D910_04340	D910_05674	N6U3X1	U4U5E6	Uncharacterized protein.	KxDL domain-containing protein.	0.733
D910_04340	D910_07584	N6U3X1	U4UHZ2	Uncharacterized protein.	Uncharacterized protein.	0.756
D910_04340	D910_09502	N6U3X1	U4UGM9	Uncharacterized protein.	Uncharacterized protein.	0.719
D910_04340	D910_11566	N6U3X1	N6U6H3	Uncharacterized protein.	Uncharacterized protein.	0.763
D910_05674	D910_03164	U4U5E6	N6TV91	KxDL domain-containing protein.	Uncharacterized protein.	0.724
D910_05674	D910_04340	U4U5E6	N6U3X1	KxDL domain-containing protein.	Uncharacterized protein.	0.733
D910_05674	D910_07584	U4U5E6	U4UHZ2	KxDL domain-containing protein.	Uncharacterized protein.	0.895
D910_05674	D910_09502	U4U5E6	U4UGM9	KxDL domain-containing protein.	Uncharacterized protein.	0.737
D910_05674	D910_11566	U4U5E6	N6U6H3	KxDL domain-containing protein.	Uncharacterized protein.	0.793
D910_07584	D910_03164	U4UHZ2	N6TV91	Uncharacterized protein.	Uncharacterized protein.	0.767
D910_07584	D910_04340	U4UHZ2	N6U3X1	Uncharacterized protein.	Uncharacterized protein.	0.756
D910_07584	D910_05674	U4UHZ2	U4U5E6	Uncharacterized protein.	KxDL domain-containing protein.	0.895
D910_07584	D910_09502	U4UHZ2	U4UGM9	Uncharacterized protein.	Uncharacterized protein.	0.783
D910_07584	D910_11566	U4UHZ2	N6U6H3	Uncharacterized protein.	Uncharacterized protein.	0.821