11 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_07874	Uncharacterized protein. (318 aa)
	D910_00834	Uncharacterized protein. (1581 aa)
	D910_02206	Uncharacterized protein. (1072 aa)
	D910_06081	Uncharacterized protein. (1335 aa)
	D910_05180	SH3 domain-containing protein. (561 aa)
	D910_01283	Uncharacterized protein. (129 aa)
	D910_07875	PDZ domain-containing protein. (208 aa)
	D910_05179	Uncharacterized protein. (489 aa)
	D910_07876	Uncharacterized protein. (490 aa)
	D910_10415	Uncharacterized protein. (1062 aa)
	D910_00140	Uncharacterized protein. (77 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00140	D910_00834	U4UZ75	U4TZI3	Uncharacterized protein.	Uncharacterized protein.	0.452
D910_00140	D910_01283	U4UZ75	U4UB36	Uncharacterized protein.	Uncharacterized protein.	0.933
D910_00140	D910_02206	U4UZ75	U4U2F4	Uncharacterized protein.	Uncharacterized protein.	0.497
D910_00140	D910_05179	U4UZ75	U4UCW2	Uncharacterized protein.	Uncharacterized protein.	0.488
D910_00140	D910_05180	U4UZ75	U4UB12	Uncharacterized protein.	SH3 domain-containing protein.	0.488
D910_00140	D910_06081	U4UZ75	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.989
D910_00140	D910_07874	U4UZ75	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.573
D910_00140	D910_07875	U4UZ75	U4UBU1	Uncharacterized protein.	PDZ domain-containing protein.	0.573
D910_00140	D910_07876	U4UZ75	U4UDZ2	Uncharacterized protein.	Uncharacterized protein.	0.573
D910_00140	D910_10415	U4UZ75	U4UKU8	Uncharacterized protein.	Uncharacterized protein.	0.549
D910_00834	D910_00140	U4TZI3	U4UZ75	Uncharacterized protein.	Uncharacterized protein.	0.452
D910_00834	D910_01283	U4TZI3	U4UB36	Uncharacterized protein.	Uncharacterized protein.	0.452
D910_00834	D910_05179	U4TZI3	U4UCW2	Uncharacterized protein.	Uncharacterized protein.	0.470
D910_00834	D910_05180	U4TZI3	U4UB12	Uncharacterized protein.	SH3 domain-containing protein.	0.470
D910_00834	D910_06081	U4TZI3	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00834	D910_07874	U4TZI3	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_00834	D910_07875	U4TZI3	U4UBU1	Uncharacterized protein.	PDZ domain-containing protein.	0.749
D910_00834	D910_07876	U4TZI3	U4UDZ2	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_00834	D910_10415	U4TZI3	U4UKU8	Uncharacterized protein.	Uncharacterized protein.	0.641
D910_01283	D910_00140	U4UB36	U4UZ75	Uncharacterized protein.	Uncharacterized protein.	0.933