10 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_11852	Uncharacterized protein. (975 aa)
	D910_11850	Uncharacterized protein. (344 aa)
	D910_11391	Uncharacterized protein. (274 aa)
	D910_11846	FSA_C domain-containing protein. (1831 aa)
	D910_11851	Uncharacterized protein. (1216 aa)
	D910_11389	Uncharacterized protein. (1320 aa)
	D910_11849	Uncharacterized protein. (167 aa)
	D910_11390	Uncharacterized protein. (359 aa)
	D910_11392	Uncharacterized protein. (1037 aa)
	D910_11848	Uncharacterized protein. (467 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_11389	D910_11390	U4ULV9	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11389	D910_11391	U4ULV9	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11389	D910_11392	U4ULV9	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11390	D910_11389	U4UNQ1	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11390	D910_11391	U4UNQ1	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11390	D910_11392	U4UNQ1	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11391	D910_11389	U4UJ58	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11391	D910_11390	U4UJ58	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11391	D910_11392	U4UJ58	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.854
D910_11392	D910_11389	U4UV86	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11392	D910_11390	U4UV86	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11392	D910_11391	U4UV86	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.854
D910_11846	D910_11848	U4UKG3	U4UWB5	FSA_C domain-containing protein.	Uncharacterized protein.	0.929
D910_11846	D910_11849	U4UKG3	U4UN66	FSA_C domain-containing protein.	Uncharacterized protein.	0.924
D910_11846	D910_11850	U4UKG3	N6U626	FSA_C domain-containing protein.	Uncharacterized protein.	0.924
D910_11846	D910_11851	U4UKG3	U4UKG8	FSA_C domain-containing protein.	Uncharacterized protein.	0.940
D910_11846	D910_11852	U4UKG3	N6TXH3	FSA_C domain-containing protein.	Uncharacterized protein.	0.938
D910_11848	D910_11846	U4UWB5	U4UKG3	Uncharacterized protein.	FSA_C domain-containing protein.	0.929
D910_11848	D910_11849	U4UWB5	U4UN66	Uncharacterized protein.	Uncharacterized protein.	0.934
D910_11848	D910_11850	U4UWB5	N6U626	Uncharacterized protein.	Uncharacterized protein.	0.935