20 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_08742	Uncharacterized protein. (212 aa)
	D910_05695	BRO1 domain-containing protein. (824 aa)
	D910_09371	Uncharacterized protein. (223 aa)
	D910_10140	Uncharacterized protein. (206 aa)
	D910_07890	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (252 aa)
	D910_03638	Uncharacterized protein. (220 aa)
	D910_03047	GLUE N-terminal domain-containing protein. (391 aa)
	D910_12202	Uncharacterized protein. (288 aa)
	D910_00332	Uncharacterized protein. (219 aa)
	D910_05303	Uncharacterized protein. (391 aa)
	D910_11633	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	D910_06141	Uncharacterized protein; Belongs to the VPS28 family. (214 aa)
	D910_02124	Uncharacterized protein. (212 aa)
	D910_05390	Uncharacterized protein. (250 aa)
	D910_08261	Uncharacterized protein. (177 aa)
	D910_09976	Uncharacterized protein; Belongs to the AAA ATPase family. (180 aa)
	D910_08863	Uncharacterized protein. (347 aa)
	D910_09870	VPS37 C-terminal domain-containing protein. (236 aa)
	D910_10100	Uncharacterized protein. (365 aa)
	D910_11162	Uncharacterized protein. (427 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00332	D910_02124	N6TGA5	U4TT48	Uncharacterized protein.	Uncharacterized protein.	0.987
D910_00332	D910_03047	N6TGA5	J3JYD3	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.896
D910_00332	D910_03638	N6TGA5	J3JXU3	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00332	D910_05303	N6TGA5	N6TTI4	Uncharacterized protein.	Uncharacterized protein.	0.898
D910_00332	D910_05390	N6TGA5	U4UBM3	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00332	D910_05695	N6TGA5	J3JTI1	Uncharacterized protein.	BRO1 domain-containing protein.	0.689
D910_00332	D910_06141	N6TGA5	N6UMU8	Uncharacterized protein.	Uncharacterized protein; Belongs to the VPS28 family.	0.909
D910_00332	D910_07890	N6TGA5	J3JXJ9	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.907
D910_00332	D910_08261	N6TGA5	U4UCZ9	Uncharacterized protein.	Uncharacterized protein.	0.896
D910_00332	D910_08742	N6TGA5	J3JT77	Uncharacterized protein.	Uncharacterized protein.	0.888
D910_00332	D910_08863	N6TGA5	U4UGQ6	Uncharacterized protein.	Uncharacterized protein.	0.889
D910_00332	D910_09371	N6TGA5	J3JUU3	Uncharacterized protein.	Uncharacterized protein.	0.963
D910_00332	D910_09870	N6TGA5	U4UHP9	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.892
D910_00332	D910_09976	N6TGA5	U4UFB0	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.890
D910_00332	D910_10100	N6TGA5	U4UIE7	Uncharacterized protein.	Uncharacterized protein.	0.955
D910_00332	D910_10140	N6TGA5	J3JW90	Uncharacterized protein.	Uncharacterized protein.	0.976
D910_00332	D910_11162	N6TGA5	U4UUL4	Uncharacterized protein.	Uncharacterized protein.	0.966
D910_00332	D910_11633	N6TGA5	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.890
D910_00332	D910_12202	N6TGA5	N6T820	Uncharacterized protein.	Uncharacterized protein.	0.830
D910_02124	D910_00332	U4TT48	N6TGA5	Uncharacterized protein.	Uncharacterized protein.	0.987