5 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_09371	Uncharacterized protein. (223 aa)
	D910_10140	Uncharacterized protein. (206 aa)
	D910_11633	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	D910_08863	Uncharacterized protein. (347 aa)
	D910_10100	Uncharacterized protein. (365 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_08863	D910_09371	U4UGQ6	J3JUU3	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_08863	D910_10100	U4UGQ6	U4UIE7	Uncharacterized protein.	Uncharacterized protein.	0.979
D910_08863	D910_10140	U4UGQ6	J3JW90	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_08863	D910_11633	U4UGQ6	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.996
D910_09371	D910_08863	J3JUU3	U4UGQ6	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_09371	D910_10100	J3JUU3	U4UIE7	Uncharacterized protein.	Uncharacterized protein.	0.966
D910_09371	D910_10140	J3JUU3	J3JW90	Uncharacterized protein.	Uncharacterized protein.	0.969
D910_09371	D910_11633	J3JUU3	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.981
D910_10100	D910_08863	U4UIE7	U4UGQ6	Uncharacterized protein.	Uncharacterized protein.	0.979
D910_10100	D910_09371	U4UIE7	J3JUU3	Uncharacterized protein.	Uncharacterized protein.	0.966
D910_10100	D910_10140	U4UIE7	J3JW90	Uncharacterized protein.	Uncharacterized protein.	0.993
D910_10100	D910_11633	U4UIE7	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.953
D910_10140	D910_08863	J3JW90	U4UGQ6	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_10140	D910_09371	J3JW90	J3JUU3	Uncharacterized protein.	Uncharacterized protein.	0.969
D910_10140	D910_10100	J3JW90	U4UIE7	Uncharacterized protein.	Uncharacterized protein.	0.993
D910_10140	D910_11633	J3JW90	N6TV25	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.992
D910_11633	D910_08863	N6TV25	U4UGQ6	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.996
D910_11633	D910_09371	N6TV25	J3JUU3	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.981
D910_11633	D910_10100	N6TV25	U4UIE7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.953
D910_11633	D910_10140	N6TV25	J3JW90	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.992