23 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	D910_01057	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (609 aa)
	D910_01076	Ribosomal_L7Ae domain-containing protein. (151 aa)
	D910_05155	Brix domain-containing protein. (348 aa)
	D910_05686	HIT-type domain-containing protein. (308 aa)
	D910_07493	Uncharacterized protein. (351 aa)
	D910_06542	Uncharacterized protein. (144 aa)
	D910_06359	Uncharacterized protein. (838 aa)
	D910_12193	Ribosomal_S27 domain-containing protein. (302 aa)
	D910_10585	RRM domain-containing protein. (241 aa)
	D910_07230	Uncharacterized protein. (357 aa)
	D910_02169	Ribosomal_L7Ae domain-containing protein. (268 aa)
	D910_01079	Uncharacterized protein. (123 aa)
	D910_00703	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (534 aa)
	D910_03212	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (420 aa)
	D910_11290	Uncharacterized protein. (217 aa)
	D910_12173	Brix domain-containing protein. (344 aa)
	D910_12523	Uncharacterized protein. (486 aa)
	D910_07586	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (728 aa)
	D910_07094	Npa1 domain-containing protein. (1291 aa)
	D910_06076	RNA helicase. (596 aa)
	D910_05606	Uncharacterized protein. (252 aa)
	D910_07095	NopRA1 domain-containing protein. (245 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00703	D910_01057	U4U0W2	U4TSS9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.965
D910_00703	D910_01076	U4U0W2	U4TQU9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosomal_L7Ae domain-containing protein.	0.792
D910_00703	D910_01079	U4U0W2	J3JTD2	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.899
D910_00703	D910_02169	U4U0W2	J3JUY3	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosomal_L7Ae domain-containing protein.	0.952
D910_00703	D910_03212	U4U0W2	U4TYA8	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.999
D910_00703	D910_05155	U4U0W2	N6UM87	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Brix domain-containing protein.	0.986
D910_00703	D910_05606	U4U0W2	U4U795	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.987
D910_00703	D910_06076	U4U0W2	U4U8K9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	RNA helicase.	0.996
D910_00703	D910_06359	U4U0W2	N6TQ08	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.991
D910_00703	D910_07230	U4U0W2	J3JVE1	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.622
D910_00703	D910_07493	U4U0W2	N6TSK1	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.992
D910_00703	D910_07586	U4U0W2	U4UD33	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.999
D910_00703	D910_10585	U4U0W2	J3JVF4	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	RRM domain-containing protein.	0.994
D910_00703	D910_11290	U4U0W2	U4UUZ1	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.831
D910_00703	D910_12173	U4U0W2	U4UXA2	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Brix domain-containing protein.	0.992
D910_00703	D910_12193	U4U0W2	N6T812	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosomal_S27 domain-containing protein.	0.997
D910_00703	D910_12523	U4U0W2	U4UY08	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.739
D910_00703	EIF6	U4U0W2	U4U5X3	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.983
D910_01057	D910_00703	U4TSS9	U4U0W2	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.965
D910_01057	D910_01076	U4TSS9	U4TQU9	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosomal_L7Ae domain-containing protein.	0.809