16 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10277	EF-hand domain-containing protein. (326 aa)
	D910_04485	Metallophos domain-containing protein. (355 aa)
	D910_11151	GOLD domain-containing protein. (220 aa)
	D910_11199	GOLD domain-containing protein. (216 aa)
	D910_09039	TPT domain-containing protein. (410 aa)
	D910_10939	Uncharacterized protein. (542 aa)
	D910_05685	Uncharacterized protein; Belongs to the synaptobrevin family. (246 aa)
	D910_11400	Uncharacterized protein. (270 aa)
	D910_07306	Uncharacterized protein. (264 aa)
	D910_09097	WD_REPEATS_REGION domain-containing protein. (1158 aa)
	D910_03235	Uncharacterized protein. (368 aa)
	D910_02448	Uncharacterized protein. (441 aa)
	D910_11120	Uncharacterized protein. (183 aa)
	D910_10668	Uncharacterized protein. (85 aa)
	D910_01951	GOLD domain-containing protein. (239 aa)
	D910_03319	GOLD domain-containing protein. (189 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01951	D910_03319	N6SYY8	U4TWG6	GOLD domain-containing protein.	GOLD domain-containing protein.	0.509
D910_03319	D910_01951	U4TWG6	N6SYY8	GOLD domain-containing protein.	GOLD domain-containing protein.	0.509
D910_03319	D910_05685	U4TWG6	N6TZX5	GOLD domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.818
D910_03319	D910_09097	U4TWG6	N6TFP7	GOLD domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.819
D910_03319	D910_11151	U4TWG6	J3JTM7	GOLD domain-containing protein.	GOLD domain-containing protein.	0.683
D910_03319	D910_11199	U4TWG6	J3JVH9	GOLD domain-containing protein.	GOLD domain-containing protein.	0.982
D910_03319	D910_11400	U4TWG6	N6TF48	GOLD domain-containing protein.	Uncharacterized protein.	0.883
D910_05685	D910_03319	N6TZX5	U4TWG6	Uncharacterized protein; Belongs to the synaptobrevin family.	GOLD domain-containing protein.	0.818
D910_05685	D910_09097	N6TZX5	N6TFP7	Uncharacterized protein; Belongs to the synaptobrevin family.	WD_REPEATS_REGION domain-containing protein.	0.811
D910_05685	D910_11199	N6TZX5	J3JVH9	Uncharacterized protein; Belongs to the synaptobrevin family.	GOLD domain-containing protein.	0.705
D910_05685	D910_11400	N6TZX5	N6TF48	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.679
D910_09097	D910_03319	N6TFP7	U4TWG6	WD_REPEATS_REGION domain-containing protein.	GOLD domain-containing protein.	0.819
D910_09097	D910_05685	N6TFP7	N6TZX5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.811
D910_09097	D910_11400	N6TFP7	N6TF48	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.726
D910_11151	D910_03319	J3JTM7	U4TWG6	GOLD domain-containing protein.	GOLD domain-containing protein.	0.683
D910_11199	D910_03319	J3JVH9	U4TWG6	GOLD domain-containing protein.	GOLD domain-containing protein.	0.982
D910_11199	D910_05685	J3JVH9	N6TZX5	GOLD domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.705
D910_11199	D910_11400	J3JVH9	N6TF48	GOLD domain-containing protein.	Uncharacterized protein.	0.826
D910_11400	D910_03319	N6TF48	U4TWG6	Uncharacterized protein.	GOLD domain-containing protein.	0.883
D910_11400	D910_05685	N6TF48	N6TZX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.679