35 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_05328	Uncharacterized protein. (215 aa)
	D910_10948	Uncharacterized protein; Belongs to the AAA ATPase family. (808 aa)
	D910_10566	Uncharacterized protein. (1083 aa)
	D910_10327	WD_REPEATS_REGION domain-containing protein. (994 aa)
	D910_10079	DUF1713 domain-containing protein. (238 aa)
	D910_09224	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	D910_06736	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...] (328 aa)
	D910_07225	Uncharacterized protein. (229 aa)
	D910_06946	Uncharacterized protein. (259 aa)
	D910_07671	Uncharacterized protein. (701 aa)
	D910_03641	Uncharacterized protein. (773 aa)
	D910_07553	Pecanex_C domain-containing protein. (2225 aa)
	D910_07513	Uncharacterized protein. (1318 aa)
	D910_01210	Uncharacterized protein. (316 aa)
	D910_05340	C2 domain-containing protein. (137 aa)
	D910_01859	Uncharacterized protein. (739 aa)
	D910_02813	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. (473 aa)
	D910_02901	Uncharacterized protein. (160 aa)
	D910_02490	Uncharacterized protein. (678 aa)
	D910_02556	Sec16 domain-containing protein. (1717 aa)
	D910_00401	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (810 aa)
	D910_09416	Uncharacterized protein. (223 aa)
	D910_12442	Uncharacterized protein. (120 aa)
	D910_03525	Uncharacterized protein. (199 aa)
	D910_10275	MSP domain-containing protein. (244 aa)
	D910_09686	Uncharacterized protein. (232 aa)
	D910_06972	Glyco_trans_2-like domain-containing protein. (348 aa)
	D910_12697	Uncharacterized protein. (462 aa)
	D910_10028	GB1/RHD3-type G domain-containing protein. (551 aa)
	D910_05638	Uncharacterized protein. (290 aa)
	D910_01542	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (776 aa)
	D910_10495	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (171 aa)
	D910_09653	DUF2012 domain-containing protein. (232 aa)
	D910_10643	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	D910_12397	Ubiquitin-like domain-containing protein. (129 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00401	D910_02556	U4TRT6	U4TU95	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Sec16 domain-containing protein.	0.957
D910_00401	D910_09224	U4TRT6	U4UP32	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.968
D910_00401	D910_10327	U4TRT6	U4USE8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.975
D910_00401	D910_10566	U4TRT6	U4UT33	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.984
D910_01542	D910_02556	J3JX23	U4TU95	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Sec16 domain-containing protein.	0.957
D910_01542	D910_09224	J3JX23	U4UP32	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.968
D910_01542	D910_10327	J3JX23	U4USE8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.975
D910_01542	D910_10566	J3JX23	U4UT33	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.997
D910_01859	D910_02901	U4U1F5	U4TXG0	Uncharacterized protein.	Uncharacterized protein.	0.764
D910_01859	D910_06736	U4U1F5	U4UHL6	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.993
D910_01859	D910_12397	U4U1F5	J3JTE2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.883
D910_02556	D910_00401	U4TU95	U4TRT6	Sec16 domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.957
D910_02556	D910_01542	U4TU95	J3JX23	Sec16 domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.957
D910_02556	D910_09224	U4TU95	U4UP32	Sec16 domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.943
D910_02556	D910_10327	U4TU95	U4USE8	Sec16 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.963
D910_02556	D910_10566	U4TU95	U4UT33	Sec16 domain-containing protein.	Uncharacterized protein.	0.986
D910_02901	D910_01859	U4TXG0	U4U1F5	Uncharacterized protein.	Uncharacterized protein.	0.764
D910_02901	D910_06736	U4TXG0	U4UHL6	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.995
D910_02901	D910_10079	U4TXG0	U4URJ2	Uncharacterized protein.	DUF1713 domain-containing protein.	0.563
D910_02901	D910_12397	U4TXG0	J3JTE2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.453