19 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_03530	MITF_TFEB_C_3_N domain-containing protein. (228 aa)
	D910_02335	WD_REPEATS_REGION domain-containing protein. (772 aa)
	D910_05691	PX domain-containing protein. (558 aa)
	D910_08735	Sulfotransfer_1 domain-containing protein. (365 aa)
	D910_09442	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (545 aa)
	D910_11076	Uncharacterized protein. (789 aa)
	D910_11250	Pep3_Vps18 domain-containing protein. (947 aa)
	D910_05250	Uncharacterized protein. (217 aa)
	D910_09793	Clat_adaptor_s domain-containing protein. (191 aa)
	D910_12142	AP3B1_C domain-containing protein. (1043 aa)
	D910_03371	MFS domain-containing protein. (461 aa)
	D910_05065	Uncharacterized protein. (504 aa)
	D910_00249	Uncharacterized protein. (602 aa)
	D910_12032	Battenin. (408 aa)
	D910_01171	WH2 domain-containing protein. (444 aa)
	D910_06587	Uncharacterized protein. (392 aa)
	D910_04488	Uncharacterized protein. (215 aa)
	D910_11080	Uncharacterized protein. (152 aa)
	D910_10948	Uncharacterized protein; Belongs to the AAA ATPase family. (808 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_02335	D910_11080	U4TVW4	U4UIG1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.632
D910_04488	D910_05250	N6U3U2	U4U4A1	Uncharacterized protein.	Uncharacterized protein.	0.498
D910_05250	D910_04488	U4U4A1	N6U3U2	Uncharacterized protein.	Uncharacterized protein.	0.498
D910_05250	D910_11080	U4U4A1	U4UIG1	Uncharacterized protein.	Uncharacterized protein.	0.428
D910_05691	D910_12142	U4U334	N6TB90	PX domain-containing protein.	AP3B1_C domain-containing protein.	0.640
D910_09442	D910_11250	U4UGG4	U4UUW1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Pep3_Vps18 domain-containing protein.	0.980
D910_09793	D910_12142	J3JTK8	N6TB90	Clat_adaptor_s domain-containing protein.	AP3B1_C domain-containing protein.	0.999
D910_11080	D910_02335	U4UIG1	U4TVW4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.632
D910_11080	D910_05250	U4UIG1	U4U4A1	Uncharacterized protein.	Uncharacterized protein.	0.428
D910_11250	D910_09442	U4UUW1	U4UGG4	Pep3_Vps18 domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.980
D910_12142	D910_05691	N6TB90	U4U334	AP3B1_C domain-containing protein.	PX domain-containing protein.	0.640
D910_12142	D910_09793	N6TB90	J3JTK8	AP3B1_C domain-containing protein.	Clat_adaptor_s domain-containing protein.	0.999