32 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10709	Uncharacterized protein. (1017 aa)
	D910_06933	Uncharacterized protein. (265 aa)
	D910_05303	Uncharacterized protein. (391 aa)
	D910_10511	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
	D910_05600	Uncharacterized protein. (741 aa)
	D910_01129	DUF5009 domain-containing protein. (563 aa)
	D910_03084	RING-type domain-containing protein. (831 aa)
	D910_00992	PIPK domain-containing protein. (1029 aa)
	D910_03596	Uncharacterized protein. (658 aa)
	D910_05870	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (1044 aa)
	D910_05250	Uncharacterized protein. (217 aa)
	D910_03371	MFS domain-containing protein. (461 aa)
	D910_04373	E3 ubiquitin-protein ligase. (858 aa)
	D910_09976	Uncharacterized protein; Belongs to the AAA ATPase family. (180 aa)
	D910_06966	Uncharacterized protein. (262 aa)
	D910_09442	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (545 aa)
	D910_07404	Uncharacterized protein. (100 aa)
	D910_11189	Uncharacterized protein. (735 aa)
	D910_11604	Uncharacterized protein. (389 aa)
	D910_09446	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (929 aa)
	D910_10483	GRIP domain-containing protein. (1247 aa)
	D910_11250	Pep3_Vps18 domain-containing protein. (947 aa)
	D910_11606	Uncharacterized protein. (393 aa)
	D910_12600	Uncharacterized protein. (135 aa)
	D910_12738	Uncharacterized protein. (816 aa)
	D910_12827	Uncharacterized protein. (2129 aa)
	D910_00863	Uncharacterized protein. (289 aa)
	D910_10470	Uncharacterized protein. (666 aa)
	D910_06682	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	D910_08804	PX domain-containing protein. (286 aa)
	D910_10059	Uncharacterized protein. (481 aa)
	D910_12202	Uncharacterized protein. (288 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00992	D910_11604	U4TZX3	U4UPB0	PIPK domain-containing protein.	Uncharacterized protein.	0.940
D910_00992	D910_11606	U4TZX3	U4UVT5	PIPK domain-containing protein.	Uncharacterized protein.	0.937
D910_03084	D910_09446	U4TXX4	U4UPP7	RING-type domain-containing protein.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.586
D910_03084	D910_12738	U4TXX4	U4UYK7	RING-type domain-containing protein.	Uncharacterized protein.	0.459
D910_03596	D910_05250	U4U1J0	U4U4A1	Uncharacterized protein.	Uncharacterized protein.	0.411
D910_03596	D910_05870	U4U1J0	U4U3M1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	0.663
D910_03596	D910_06682	U4U1J0	J3JY72	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.432
D910_03596	D910_10511	U4U1J0	N6TVS1	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.621
D910_03596	D910_11250	U4U1J0	U4UUW1	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.583
D910_05250	D910_03596	U4U4A1	U4U1J0	Uncharacterized protein.	Uncharacterized protein.	0.411
D910_05250	D910_10059	U4U4A1	N6SZB5	Uncharacterized protein.	Uncharacterized protein.	0.917
D910_05303	D910_09976	N6TTI4	U4UFB0	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.592
D910_05303	D910_12202	N6TTI4	N6T820	Uncharacterized protein.	Uncharacterized protein.	0.987
D910_05600	D910_10470	N6TX68	J3JWF0	Uncharacterized protein.	Uncharacterized protein.	0.993
D910_05600	D910_10483	N6TX68	U4USN3	Uncharacterized protein.	GRIP domain-containing protein.	0.619
D910_05870	D910_03596	U4U3M1	U4U1J0	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein.	0.663
D910_05870	D910_06682	U4U3M1	J3JY72	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.659
D910_05870	D910_09442	U4U3M1	U4UGG4	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.973
D910_05870	D910_10059	U4U3M1	N6SZB5	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein.	0.810
D910_05870	D910_10511	U4U3M1	N6TVS1	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.623