72 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10775	Uncharacterized protein. (498 aa)
	D910_09763	Uncharacterized protein. (202 aa)
	D910_02372	Uncharacterized protein. (215 aa)
	D910_05788	Uncharacterized protein. (211 aa)
	D910_11440	Uncharacterized protein. (260 aa)
	D910_07983	Uncharacterized protein. (203 aa)
	D910_07386	Uncharacterized protein. (202 aa)
	D910_04297	Uncharacterized protein. (203 aa)
	D910_02577	Uncharacterized protein. (239 aa)
	D910_00371	Rho-GAP domain-containing protein. (147 aa)
	D910_02510	Uncharacterized protein. (643 aa)
	D910_01963	Uncharacterized protein. (378 aa)
	D910_03503	Uncharacterized protein. (1142 aa)
	D910_02878	Uncharacterized protein. (323 aa)
	D910_07308	Uncharacterized protein. (136 aa)
	D910_02621	Uncharacterized protein. (2018 aa)
	D910_02620	Uncharacterized protein. (608 aa)
	D910_04539	Uncharacterized protein. (222 aa)
	D910_11178	Uncharacterized protein. (210 aa)
	D910_04428	Uncharacterized protein. (185 aa)
	D910_10294	Uncharacterized protein. (715 aa)
	D910_11951	Amidohydro-rel domain-containing protein. (641 aa)
	D910_04498	Uncharacterized protein. (215 aa)
	D910_04488	Uncharacterized protein. (215 aa)
	D910_03410	Uncharacterized protein. (210 aa)
	D910_04292	Uncharacterized protein. (216 aa)
	D910_06982	Uncharacterized protein. (203 aa)
	D910_11527	Uncharacterized protein. (223 aa)
	D910_11508	Ras-GEF domain-containing protein. (949 aa)
	D910_02643	SH3 domain-containing protein. (549 aa)
	D910_12127	Uncharacterized protein. (184 aa)
	D910_07310	Uncharacterized protein. (95 aa)
	D910_12501	Uncharacterized protein. (1644 aa)
	D910_11515	Sema domain-containing protein. (1556 aa)
	D910_05210	Uncharacterized protein. (201 aa)
	D910_02588	Uncharacterized protein. (181 aa)
	D910_01499	Uncharacterized protein. (218 aa)
	D910_02333	Uncharacterized protein. (201 aa)
	D910_02332	Uncharacterized protein. (201 aa)
	D910_11541	PDZ domain-containing protein. (119 aa)
	D910_11526	Uncharacterized protein. (508 aa)
	D910_11003	Uncharacterized protein. (210 aa)
	D910_00066	Uncharacterized protein. (234 aa)
	D910_12313	Uncharacterized protein. (230 aa)
	D910_12067	Uncharacterized protein. (168 aa)
	D910_12504	DH domain-containing protein. (856 aa)
	D910_08407	Uncharacterized protein. (115 aa)
	D910_08362	Phorbol-ester/DAG-type domain-containing protein. (439 aa)
	D910_12314	Uncharacterized protein. (187 aa)
	D910_08363	Uncharacterized protein. (117 aa)
	D910_08122	Uncharacterized protein. (370 aa)
	D910_07309	Uncharacterized protein. (1143 aa)
	D910_09655	Uncharacterized protein. (419 aa)
	D910_09650	Uncharacterized protein. (189 aa)
	D910_07176	Uncharacterized protein. (835 aa)
	D910_09256	Rho-GAP domain-containing protein. (480 aa)
	D910_10774	FERM domain-containing protein. (3411 aa)
	D910_10316	Rho-GAP domain-containing protein. (965 aa)
	D910_08360	Protein kinase domain-containing protein. (88 aa)
	D910_08305	Uncharacterized protein. (1078 aa)
	D910_05901	Uncharacterized protein. (540 aa)
	D910_08359	Pkinase_Tyr domain-containing protein. (280 aa)
	D910_05304	Uncharacterized protein. (634 aa)
	D910_07236	Uncharacterized protein. (1081 aa)
	D910_03568	Uncharacterized protein. (664 aa)
	D910_05824	Uncharacterized protein. (707 aa)
	D910_06929	Uncharacterized protein. (110 aa)
	D910_05208	AGC-kinase C-terminal domain-containing protein. (985 aa)
	D910_04850	Uncharacterized protein. (478 aa)
	D910_02270	Uncharacterized protein. (204 aa)
	D910_03452	Uncharacterized protein. (619 aa)
	D910_01572	Rho-GAP domain-containing protein. (147 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00066	D910_12313	U4USZ0	U4URA7	Uncharacterized protein.	Uncharacterized protein.	0.920
D910_00066	D910_12314	U4USZ0	U4ULU1	Uncharacterized protein.	Uncharacterized protein.	0.918
D910_01499	D910_02510	J3JYZ5	U4TYI6	Uncharacterized protein.	Uncharacterized protein.	0.406
D910_01499	D910_04292	J3JYZ5	N6U275	Uncharacterized protein.	Uncharacterized protein.	0.418
D910_01499	D910_04539	J3JYZ5	N6UEW7	Uncharacterized protein.	Uncharacterized protein.	0.650
D910_01499	D910_05208	J3JYZ5	U4U653	Uncharacterized protein.	AGC-kinase C-terminal domain-containing protein.	0.484
D910_01499	D910_05824	J3JYZ5	U4U7Y4	Uncharacterized protein.	Uncharacterized protein.	0.432
D910_01499	D910_07983	J3JYZ5	J3JWG5	Uncharacterized protein.	Uncharacterized protein.	0.487
D910_01499	D910_09650	J3JYZ5	U4UIW0	Uncharacterized protein.	Uncharacterized protein.	0.935
D910_01499	D910_11440	J3JYZ5	J3JW00	Uncharacterized protein.	Uncharacterized protein.	0.675
D910_01499	D910_12067	J3JYZ5	U4UQI6	Uncharacterized protein.	Uncharacterized protein.	0.592
D910_02270	D910_02372	U4U2P4	J3JV86	Uncharacterized protein.	Uncharacterized protein.	0.434
D910_02270	D910_03410	U4U2P4	N6U3I6	Uncharacterized protein.	Uncharacterized protein.	0.420
D910_02270	D910_04292	U4U2P4	N6U275	Uncharacterized protein.	Uncharacterized protein.	0.595
D910_02270	D910_04297	U4U2P4	J3JWT2	Uncharacterized protein.	Uncharacterized protein.	0.441
D910_02270	D910_04488	U4U2P4	N6U3U2	Uncharacterized protein.	Uncharacterized protein.	0.431
D910_02270	D910_04498	U4U2P4	N6U3V1	Uncharacterized protein.	Uncharacterized protein.	0.625
D910_02270	D910_04539	U4U2P4	N6UEW7	Uncharacterized protein.	Uncharacterized protein.	0.475
D910_02270	D910_09763	U4U2P4	J3JV35	Uncharacterized protein.	Uncharacterized protein.	0.469
D910_02270	D910_11440	U4U2P4	J3JW00	Uncharacterized protein.	Uncharacterized protein.	0.663