38 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_11002	Spatacsin_C domain-containing protein. (1750 aa)
	D910_08460	Uncharacterized protein. (184 aa)
	D910_02997	Uncharacterized protein. (222 aa)
	D910_02481	Uncharacterized protein. (120 aa)
	D910_08164	ANK_REP_REGION domain-containing protein. (591 aa)
	D910_08662	SAC domain-containing protein. (585 aa)
	D910_02998	Uncharacterized protein. (222 aa)
	D910_10511	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
	D910_02272	Uncharacterized protein. (342 aa)
	D910_02719	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (626 aa)
	D910_08819	Uncharacterized protein. (815 aa)
	D910_11371	Uncharacterized protein; Belongs to the actin family. (376 aa)
	D910_02589	Uncharacterized protein. (151 aa)
	D910_01864	Uncharacterized protein. (3365 aa)
	D910_03309	Uncharacterized protein. (193 aa)
	D910_02881	Uncharacterized protein. (3988 aa)
	D910_04856	Uncharacterized protein. (150 aa)
	D910_02419	Uncharacterized protein. (448 aa)
	D910_02474	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (590 aa)
	D910_05260	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (476 aa)
	D910_03053	Uncharacterized protein. (1208 aa)
	D910_03311	Uncharacterized protein. (457 aa)
	D910_06735	Uncharacterized protein; Belongs to the actin family. (335 aa)
	D910_08163	Uncharacterized protein. (260 aa)
	D910_07822	Uncharacterized protein. (610 aa)
	D910_08513	Uncharacterized protein. (937 aa)
	D910_08640	Protein kinase domain-containing protein. (672 aa)
	D910_09334	Uncharacterized protein. (1782 aa)
	D910_09604	Uncharacterized protein. (4680 aa)
	D910_11200	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (697 aa)
	D910_11721	Uncharacterized protein. (684 aa)
	D910_10415	Uncharacterized protein. (1062 aa)
	D910_08162	Roc domain-containing protein. (384 aa)
	D910_09446	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (929 aa)
	D910_09332	Uncharacterized protein. (2160 aa)
	D910_09445	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (730 aa)
	D910_10678	Uncharacterized protein. (380 aa)
	D910_11901	Uncharacterized protein. (774 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01864	D910_02481	U4TUJ5	J3JWX8	Uncharacterized protein.	Uncharacterized protein.	0.736
D910_01864	D910_04856	U4TUJ5	U4U0T0	Uncharacterized protein.	Uncharacterized protein.	0.452
D910_01864	D910_05260	U4TUJ5	U4U4A8	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.760
D910_01864	D910_08162	U4TUJ5	U4UKX0	Uncharacterized protein.	Roc domain-containing protein.	0.509
D910_01864	D910_08163	U4TUJ5	U4UCN6	Uncharacterized protein.	Uncharacterized protein.	0.509
D910_01864	D910_08164	U4TUJ5	N6T055	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.509
D910_02272	D910_08162	N6U0T7	U4UKX0	Uncharacterized protein.	Roc domain-containing protein.	0.457
D910_02272	D910_08163	N6U0T7	U4UCN6	Uncharacterized protein.	Uncharacterized protein.	0.457
D910_02272	D910_08164	N6U0T7	N6T055	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.457
D910_02419	D910_08640	U4U321	U4UG13	Uncharacterized protein.	Protein kinase domain-containing protein.	0.598
D910_02474	D910_08819	U4U371	N6U6T8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.936
D910_02474	D910_11200	U4U371	U4UIR1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.737
D910_02481	D910_01864	J3JWX8	U4TUJ5	Uncharacterized protein.	Uncharacterized protein.	0.736
D910_02481	D910_05260	J3JWX8	U4U4A8	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.741
D910_02481	D910_08162	J3JWX8	U4UKX0	Uncharacterized protein.	Roc domain-containing protein.	0.491
D910_02481	D910_08163	J3JWX8	U4UCN6	Uncharacterized protein.	Uncharacterized protein.	0.491
D910_02481	D910_08164	J3JWX8	N6T055	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.491
D910_02481	D910_09332	J3JWX8	U4UPQ8	Uncharacterized protein.	Uncharacterized protein.	0.555
D910_02481	D910_09334	J3JWX8	U4UG54	Uncharacterized protein.	Uncharacterized protein.	0.421
D910_02719	D910_08819	N6U0Z3	N6U6T8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.936