20 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10198	CPSF_A domain-containing protein. (1193 aa)
	D910_10279	Snurportin1 domain-containing protein. (335 aa)
	D910_09249	Uncharacterized protein. (427 aa)
	D910_10549	MPN domain-containing protein. (2390 aa)
	D910_07540	Bin3-type SAM domain-containing protein. (613 aa)
	D910_06152	Sm domain-containing protein. (141 aa)
	D910_06374	Uncharacterized protein. (536 aa)
	D910_03987	RRM domain-containing protein. (424 aa)
	D910_04556	Matrin-type domain-containing protein. (142 aa)
	D910_02880	Uncharacterized protein. (246 aa)
	D910_02289	Uncharacterized protein. (251 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	D910_03760	Importin N-terminal domain-containing protein. (1086 aa)
	D910_08926	RRM domain-containing protein. (400 aa)
	D910_01204	Tr-type G domain-containing protein. (969 aa)
	D910_10229	Uncharacterized protein. (213 aa)
	D910_10314	Uncharacterized protein. (247 aa)
	D910_10017	Uncharacterized protein. (289 aa)
	D910_01402	Uncharacterized protein. (206 aa)
	D910_11159	WD_REPEATS_REGION domain-containing protein. (507 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01204	D910_01402	N6UE82	N6T3V1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.796
D910_01204	D910_02880	N6UE82	U4U4E6	Tr-type G domain-containing protein.	Uncharacterized protein.	0.796
D910_01204	D910_03987	N6UE82	U4U9G8	Tr-type G domain-containing protein.	RRM domain-containing protein.	0.760
D910_01204	D910_04556	N6UE82	U4U958	Tr-type G domain-containing protein.	Matrin-type domain-containing protein.	0.877
D910_01204	D910_06152	N6UE82	U4UFS8	Tr-type G domain-containing protein.	Sm domain-containing protein.	0.996
D910_01204	D910_06374	N6UE82	U4UEH0	Tr-type G domain-containing protein.	Uncharacterized protein.	0.499
D910_01204	D910_08926	N6UE82	N6UGJ7	Tr-type G domain-containing protein.	RRM domain-containing protein.	0.870
D910_01204	D910_09249	N6UE82	U4UP50	Tr-type G domain-containing protein.	Uncharacterized protein.	0.989
D910_01204	D910_10198	N6UE82	U4UKA4	Tr-type G domain-containing protein.	CPSF_A domain-containing protein.	0.989
D910_01204	D910_10229	N6UE82	N6U985	Tr-type G domain-containing protein.	Uncharacterized protein.	0.966
D910_01204	D910_10314	N6UE82	N6U2A7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.991
D910_01204	D910_10549	N6UE82	U4UL74	Tr-type G domain-containing protein.	MPN domain-containing protein.	0.999
D910_01204	D910_11159	N6UE82	J3JTE5	Tr-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.984
D910_01204	LSM4	N6UE82	U4U2M2	Tr-type G domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.930
D910_01402	D910_01204	N6T3V1	N6UE82	Uncharacterized protein.	Tr-type G domain-containing protein.	0.796
D910_01402	D910_03987	N6T3V1	U4U9G8	Uncharacterized protein.	RRM domain-containing protein.	0.709
D910_01402	D910_04556	N6T3V1	U4U958	Uncharacterized protein.	Matrin-type domain-containing protein.	0.716
D910_01402	D910_06152	N6T3V1	U4UFS8	Uncharacterized protein.	Sm domain-containing protein.	0.861
D910_01402	D910_08926	N6T3V1	N6UGJ7	Uncharacterized protein.	RRM domain-containing protein.	0.796
D910_01402	D910_09249	N6T3V1	U4UP50	Uncharacterized protein.	Uncharacterized protein.	0.738