8 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_11938	Uncharacterized protein. (254 aa)
	D910_12017	Vitellogenin domain-containing protein. (1214 aa)
	D910_12020	Uncharacterized protein. (358 aa)
	D910_01503	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (152 aa)
	D910_09117	Uncharacterized protein. (546 aa)
	D910_02364	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (543 aa)
	D910_12018	Uncharacterized protein. (258 aa)
	D910_11937	Uncharacterized protein. (2377 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_11937	D910_11938	U4UNG4	U4UQ73	Uncharacterized protein.	Uncharacterized protein.	0.947
D910_11938	D910_11937	U4UQ73	U4UNG4	Uncharacterized protein.	Uncharacterized protein.	0.947
D910_12017	D910_12018	U4UQE3	U4UKZ5	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.851
D910_12017	D910_12020	U4UQE3	U4UWR0	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.919
D910_12018	D910_12017	U4UKZ5	U4UQE3	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.851
D910_12018	D910_12020	U4UKZ5	U4UWR0	Uncharacterized protein.	Uncharacterized protein.	0.842
D910_12020	D910_12017	U4UWR0	U4UQE3	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.919
D910_12020	D910_12018	U4UWR0	U4UKZ5	Uncharacterized protein.	Uncharacterized protein.	0.842