17 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10894	Uncharacterized protein. (506 aa)
	D910_10896	Uncharacterized protein. (470 aa)
	D910_06344	Uncharacterized protein. (705 aa)
	D910_05398	Uncharacterized protein. (520 aa)
	D910_03568	Uncharacterized protein. (664 aa)
	D910_04501	VPS9 domain-containing protein. (1438 aa)
	D910_05076	Uncharacterized protein. (1579 aa)
	D910_05400	SH2 domain-containing protein. (167 aa)
	D910_07366	RIC1 domain-containing protein. (1391 aa)
	D910_05399	Uncharacterized protein. (237 aa)
	D910_06468	Uncharacterized protein. (1249 aa)
	D910_09196	UDENN domain-containing protein. (919 aa)
	D910_11620	Uncharacterized protein. (666 aa)
	D910_10970	UDENN domain-containing protein. (375 aa)
	D910_11619	Uncharacterized protein. (420 aa)
	D910_09195	Uncharacterized protein. (925 aa)
	D910_10969	Uncharacterized protein. (1644 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_03568	D910_06468	U4U883	U4UEQ5	Uncharacterized protein.	Uncharacterized protein.	0.432
D910_04501	D910_05398	U4U904	U4U2B5	VPS9 domain-containing protein.	Uncharacterized protein.	0.423
D910_04501	D910_05399	U4U904	U4UDL2	VPS9 domain-containing protein.	Uncharacterized protein.	0.423
D910_04501	D910_05400	U4U904	U4UBN1	VPS9 domain-containing protein.	SH2 domain-containing protein.	0.423
D910_04501	D910_06344	U4U904	N6UF97	VPS9 domain-containing protein.	Uncharacterized protein.	0.972
D910_05398	D910_04501	U4U2B5	U4U904	Uncharacterized protein.	VPS9 domain-containing protein.	0.423
D910_05398	D910_05400	U4U2B5	U4UBN1	Uncharacterized protein.	SH2 domain-containing protein.	0.553
D910_05398	D910_06344	U4U2B5	N6UF97	Uncharacterized protein.	Uncharacterized protein.	0.718
D910_05399	D910_04501	U4UDL2	U4U904	Uncharacterized protein.	VPS9 domain-containing protein.	0.423
D910_05399	D910_06344	U4UDL2	N6UF97	Uncharacterized protein.	Uncharacterized protein.	0.718
D910_05400	D910_04501	U4UBN1	U4U904	SH2 domain-containing protein.	VPS9 domain-containing protein.	0.423
D910_05400	D910_05398	U4UBN1	U4U2B5	SH2 domain-containing protein.	Uncharacterized protein.	0.553
D910_05400	D910_06344	U4UBN1	N6UF97	SH2 domain-containing protein.	Uncharacterized protein.	0.718
D910_06344	D910_04501	N6UF97	U4U904	Uncharacterized protein.	VPS9 domain-containing protein.	0.972
D910_06344	D910_05398	N6UF97	U4U2B5	Uncharacterized protein.	Uncharacterized protein.	0.718
D910_06344	D910_05399	N6UF97	U4UDL2	Uncharacterized protein.	Uncharacterized protein.	0.718
D910_06344	D910_05400	N6UF97	U4UBN1	Uncharacterized protein.	SH2 domain-containing protein.	0.718
D910_06344	D910_11619	N6UF97	U4UPD9	Uncharacterized protein.	Uncharacterized protein.	0.477
D910_06344	D910_11620	N6UF97	U4UJV1	Uncharacterized protein.	Uncharacterized protein.	0.477
D910_06468	D910_03568	U4UEQ5	U4U883	Uncharacterized protein.	Uncharacterized protein.	0.432