51 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_12355	Uncharacterized protein. (1292 aa)
	D910_09447	Uncharacterized protein. (1262 aa)
	D910_09594	SH2 domain-containing protein. (116 aa)
	D910_10608	Cbl-PTB domain-containing protein. (181 aa)
	D910_05789	Rhomboid domain-containing protein. (720 aa)
	D910_05502	Uncharacterized protein. (167 aa)
	D910_05452	Ig-like domain-containing protein. (657 aa)
	D910_12146	Uncharacterized protein. (229 aa)
	D910_05353	Sulfatase domain-containing protein. (688 aa)
	D910_02066	Uncharacterized protein. (462 aa)
	D910_11633	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	D910_04770	Uncharacterized protein. (275 aa)
	D910_09592	SH3 domain-containing protein. (125 aa)
	D910_09455	SH2 domain-containing protein. (278 aa)
	D910_10857	Uncharacterized protein. (1669 aa)
	D910_02908	Uncharacterized protein. (360 aa)
	D910_09236	FERM domain-containing protein. (136 aa)
	D910_07864	Protein kinase domain-containing protein. (249 aa)
	D910_00582	C2 domain-containing protein. (224 aa)
	D910_12356	Uncharacterized protein. (634 aa)
	D910_11818	Uncharacterized protein. (97 aa)
	D910_11813	Uncharacterized protein; Belongs to the MAGUK family. (497 aa)
	D910_11708	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2794 aa)
	D910_00083	Uncharacterized protein. (239 aa)
	D910_12714	PNT domain-containing protein. (138 aa)
	D910_09557	PUM-HD domain-containing protein. (258 aa)
	D910_11814	Uncharacterized protein. (245 aa)
	D910_10881	Uncharacterized protein. (563 aa)
	D910_08402	Peptidase M12B domain-containing protein. (162 aa)
	D910_08403	Uncharacterized protein. (537 aa)
	D910_10569	Uncharacterized protein. (420 aa)
	D910_07863	CNH domain-containing protein. (604 aa)
	D910_07430	FYVE-type domain-containing protein. (781 aa)
	D910_09595	TyrKc domain-containing protein. (112 aa)
	D910_01740	PUM-HD domain-containing protein. (495 aa)
	D910_01463	PUM-HD domain-containing protein. (501 aa)
	D910_02510	Uncharacterized protein. (643 aa)
	D910_00371	Rho-GAP domain-containing protein. (147 aa)
	D910_01572	Rho-GAP domain-containing protein. (147 aa)
	D910_03452	Uncharacterized protein. (619 aa)
	D910_02019	DH domain-containing protein. (173 aa)
	D910_02484	Uncharacterized protein. (431 aa)
	D910_05969	Fibronectin type-III domain-containing protein. (149 aa)
	D910_05250	Uncharacterized protein. (217 aa)
	D910_04293	Uncharacterized protein. (669 aa)
	D910_06724	Uncharacterized protein. (1466 aa)
	D910_07591	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1224 aa)
	D910_05970	Uncharacterized protein. (408 aa)
	D910_02333	Uncharacterized protein. (201 aa)
	D910_12202	Uncharacterized protein. (288 aa)
	D910_08829	Uncharacterized protein. (491 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00083	D910_03452	U4UT05	U4U166	Uncharacterized protein.	Uncharacterized protein.	0.435
D910_00083	D910_04293	U4UT05	U4UAB7	Uncharacterized protein.	Uncharacterized protein.	0.757
D910_00083	D910_04770	U4UT05	N6TWI3	Uncharacterized protein.	Uncharacterized protein.	0.629
D910_00083	D910_07591	U4UT05	U4UD37	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.583
D910_00083	D910_09236	U4UT05	N6U914	Uncharacterized protein.	FERM domain-containing protein.	0.552
D910_00083	D910_09592	U4UT05	N6TZH6	Uncharacterized protein.	SH3 domain-containing protein.	0.532
D910_00083	D910_09594	U4UT05	U4UGX2	Uncharacterized protein.	SH2 domain-containing protein.	0.639
D910_00083	D910_09595	U4UT05	U4UIP2	Uncharacterized protein.	TyrKc domain-containing protein.	0.532
D910_00083	D910_10608	U4UT05	U4UH44	Uncharacterized protein.	Cbl-PTB domain-containing protein.	0.929
D910_00582	D910_02333	U4TS23	J3JYW1	C2 domain-containing protein.	Uncharacterized protein.	0.489
D910_00582	D910_10881	U4TS23	U4UM84	C2 domain-containing protein.	Uncharacterized protein.	0.942
D910_01463	D910_09557	U4TVX2	U4UQC9	PUM-HD domain-containing protein.	PUM-HD domain-containing protein.	0.928
D910_01740	D910_09557	U4TS80	U4UQC9	PUM-HD domain-containing protein.	PUM-HD domain-containing protein.	0.928
D910_02066	D910_04770	N6TLI5	N6TWI3	Uncharacterized protein.	Uncharacterized protein.	0.499
D910_02066	D910_09236	N6TLI5	N6U914	Uncharacterized protein.	FERM domain-containing protein.	0.904
D910_02066	D910_09592	N6TLI5	N6TZH6	Uncharacterized protein.	SH3 domain-containing protein.	0.499
D910_02066	D910_09594	N6TLI5	U4UGX2	Uncharacterized protein.	SH2 domain-containing protein.	0.499
D910_02066	D910_09595	N6TLI5	U4UIP2	Uncharacterized protein.	TyrKc domain-containing protein.	0.499
D910_02066	D910_10569	N6TLI5	U4UL93	Uncharacterized protein.	Uncharacterized protein.	0.453
D910_02333	D910_00582	J3JYW1	U4TS23	Uncharacterized protein.	C2 domain-containing protein.	0.489