42 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_02994	Uncharacterized protein. (336 aa)
	D910_06208	Uncharacterized protein. (821 aa)
	D910_08163	Uncharacterized protein. (260 aa)
	D910_05105	Uncharacterized protein. (102 aa)
	D910_07366	RIC1 domain-containing protein. (1391 aa)
	D910_05106	Foie-gras_1 domain-containing protein. (1020 aa)
	D910_03863	PX domain-containing protein. (167 aa)
	D910_05808	PX domain-containing protein. (452 aa)
	D910_05691	PX domain-containing protein. (558 aa)
	D910_02405	Uncharacterized protein. (113 aa)
	D910_11266	Uncharacterized protein. (415 aa)
	D910_05873	t-SNARE coiled-coil homology domain-containing protein. (216 aa)
	D910_10857	Uncharacterized protein. (1669 aa)
	D910_06666	t-SNARE coiled-coil homology domain-containing protein. (156 aa)
	D910_04292	Uncharacterized protein. (216 aa)
	D910_05600	Uncharacterized protein. (741 aa)
	D910_05332	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	D910_07606	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (865 aa)
	D910_07993	PH domain-containing protein. (238 aa)
	D910_09617	PX domain-containing protein. (485 aa)
	D910_06893	Uncharacterized protein. (326 aa)
	D910_08164	ANK_REP_REGION domain-containing protein. (591 aa)
	D910_03933	Uncharacterized protein. (129 aa)
	D910_05664	Uncharacterized protein. (384 aa)
	D910_07900	Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (205 aa)
	D910_05918	Uncharacterized protein. (140 aa)
	D910_10470	Uncharacterized protein. (666 aa)
	D910_07404	Uncharacterized protein. (100 aa)
	D910_06945	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (929 aa)
	D910_11973	Uncharacterized protein. (742 aa)
	D910_08162	Roc domain-containing protein. (384 aa)
	D910_11268	Uncharacterized protein. (669 aa)
	D910_01171	WH2 domain-containing protein. (444 aa)
	D910_11972	Uncharacterized protein. (1041 aa)
	D910_12067	Uncharacterized protein. (168 aa)
	D910_12709	VPS53_C domain-containing protein. (175 aa)
	D910_12710	Vps53_N domain-containing protein. (536 aa)
	D910_10347	Uncharacterized protein. (929 aa)
	D910_10483	GRIP domain-containing protein. (1247 aa)
	D910_00249	Uncharacterized protein. (602 aa)
	D910_11974	Uncharacterized protein. (126 aa)
	D910_00068	Uncharacterized protein. (76 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_02994	D910_03863	N6TU98	U4U778	Uncharacterized protein.	PX domain-containing protein.	0.978
D910_02994	D910_04292	N6TU98	N6U275	Uncharacterized protein.	Uncharacterized protein.	0.517
D910_02994	D910_05691	N6TU98	U4U334	Uncharacterized protein.	PX domain-containing protein.	0.754
D910_02994	D910_05808	N6TU98	U4U5U2	Uncharacterized protein.	PX domain-containing protein.	0.616
D910_02994	D910_06945	N6TU98	U4UI68	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.997
D910_02994	D910_07606	N6TU98	N6TII3	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.994
D910_02994	D910_09617	N6TU98	N6T3D5	Uncharacterized protein.	PX domain-containing protein.	0.958
D910_03863	D910_02994	U4U778	N6TU98	PX domain-containing protein.	Uncharacterized protein.	0.978
D910_03863	D910_05691	U4U778	U4U334	PX domain-containing protein.	PX domain-containing protein.	0.742
D910_03863	D910_05808	U4U778	U4U5U2	PX domain-containing protein.	PX domain-containing protein.	0.644
D910_03863	D910_06945	U4U778	U4UI68	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.992
D910_03863	D910_07606	U4U778	N6TII3	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.913
D910_03863	D910_09617	U4U778	N6T3D5	PX domain-containing protein.	PX domain-containing protein.	0.747
D910_03863	D910_11268	U4U778	U4UNE2	PX domain-containing protein.	Uncharacterized protein.	0.456
D910_03933	D910_04292	N6SRH7	N6U275	Uncharacterized protein.	Uncharacterized protein.	0.685
D910_03933	D910_05600	N6SRH7	N6TX68	Uncharacterized protein.	Uncharacterized protein.	0.687
D910_03933	D910_05664	N6SRH7	J3JZK9	Uncharacterized protein.	Uncharacterized protein.	0.545
D910_03933	D910_05873	N6SRH7	N6UGU0	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.961
D910_03933	D910_06208	N6SRH7	U4UE23	Uncharacterized protein.	Uncharacterized protein.	0.660
D910_03933	D910_06666	N6SRH7	N6U502	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.958