8 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_02761	Uncharacterized protein. (4044 aa)
	D910_04647	Uncharacterized protein. (3873 aa)
	D910_09370	Uncharacterized protein. (3272 aa)
	D910_11391	Uncharacterized protein. (274 aa)
	D910_11389	Uncharacterized protein. (1320 aa)
	D910_11390	Uncharacterized protein. (359 aa)
	D910_11392	Uncharacterized protein. (1037 aa)
	D910_12827	Uncharacterized protein. (2129 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_02761	D910_04647	U4U445	U4UBA7	Uncharacterized protein.	Uncharacterized protein.	0.462
D910_04647	D910_02761	U4UBA7	U4U445	Uncharacterized protein.	Uncharacterized protein.	0.462
D910_11389	D910_11390	U4ULV9	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11389	D910_11391	U4ULV9	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11389	D910_11392	U4ULV9	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11390	D910_11389	U4UNQ1	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11390	D910_11391	U4UNQ1	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11390	D910_11392	U4UNQ1	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11391	D910_11389	U4UJ58	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11391	D910_11390	U4UJ58	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11391	D910_11392	U4UJ58	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.854
D910_11392	D910_11389	U4UV86	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11392	D910_11390	U4UV86	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11392	D910_11391	U4UV86	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.854