10 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_11620	Uncharacterized protein. (666 aa)
	D910_10505	Uncharacterized protein. (365 aa)
	D910_04283	Uncharacterized protein. (238 aa)
	D910_01963	Uncharacterized protein. (378 aa)
	D910_05065	Uncharacterized protein. (504 aa)
	D910_03093	Uncharacterized protein. (245 aa)
	D910_11189	Uncharacterized protein. (735 aa)
	D910_11250	Pep3_Vps18 domain-containing protein. (947 aa)
	D910_09446	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (929 aa)
	D910_11619	Uncharacterized protein. (420 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01963	D910_05065	U4TX09	U4UCK1	Uncharacterized protein.	Uncharacterized protein.	0.503
D910_03093	D910_05065	U4TXY4	U4UCK1	Uncharacterized protein.	Uncharacterized protein.	0.503
D910_05065	D910_01963	U4UCK1	U4TX09	Uncharacterized protein.	Uncharacterized protein.	0.503
D910_05065	D910_03093	U4UCK1	U4TXY4	Uncharacterized protein.	Uncharacterized protein.	0.503
D910_11189	D910_11250	U4UN67	U4UUW1	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.956
D910_11250	D910_11189	U4UUW1	U4UN67	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.956
D910_11619	D910_11620	U4UPD9	U4UJV1	Uncharacterized protein.	Uncharacterized protein.	0.728
D910_11620	D910_11619	U4UJV1	U4UPD9	Uncharacterized protein.	Uncharacterized protein.	0.728