8 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_00834	Uncharacterized protein. (1581 aa)
	D910_02206	Uncharacterized protein. (1072 aa)
	D910_06081	Uncharacterized protein. (1335 aa)
	D910_08309	Uncharacterized protein. (488 aa)
	D910_07874	Uncharacterized protein. (318 aa)
	D910_01591	Uncharacterized protein. (469 aa)
	D910_01613	Uncharacterized protein. (128 aa)
	D910_01590	Uncharacterized protein. (126 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00834	D910_06081	U4TZI3	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_00834	D910_07874	U4TZI3	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_00834	D910_08309	U4TZI3	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.576
D910_01590	D910_06081	U4U0X7	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_01590	D910_07874	U4U0X7	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_01590	D910_08309	U4U0X7	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.564
D910_01591	D910_06081	U4TTW9	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_01591	D910_07874	U4TTW9	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_01591	D910_08309	U4TTW9	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.564
D910_01613	D910_06081	U4TW84	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_01613	D910_07874	U4TW84	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_01613	D910_08309	U4TW84	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.564
D910_02206	D910_06081	U4U2F4	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_02206	D910_07874	U4U2F4	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.749
D910_02206	D910_08309	U4U2F4	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.673
D910_06081	D910_00834	U4U462	U4TZI3	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_06081	D910_01590	U4U462	U4U0X7	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_06081	D910_01591	U4U462	U4TTW9	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_06081	D910_01613	U4U462	U4TW84	Uncharacterized protein.	Uncharacterized protein.	0.997
D910_06081	D910_02206	U4U462	U4U2F4	Uncharacterized protein.	Uncharacterized protein.	0.997