40 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_08922	Uncharacterized protein. (96 aa)
	D910_06098	ZnMc domain-containing protein. (350 aa)
	D910_08924	Uncharacterized protein. (109 aa)
	D910_04858	Laminin IV type A domain-containing protein. (195 aa)
	D910_04857	Uncharacterized protein. (208 aa)
	D910_04815	Uncharacterized protein. (782 aa)
	D910_08570	Uncharacterized protein. (362 aa)
	D910_05076	Uncharacterized protein. (1579 aa)
	D910_01542	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (776 aa)
	D910_07400	CDP-diacylglycerol--inositol 3-phosphatidyltransferase. (220 aa)
	D910_00356	Uncharacterized protein. (922 aa)
	D910_12030	Uncharacterized protein. (1817 aa)
	D910_10741	Collagen IV NC1 domain-containing protein. (1775 aa)
	D910_00137	Laminin EGF-like domain-containing protein. (299 aa)
	D910_10566	Uncharacterized protein. (1083 aa)
	D910_00136	Uncharacterized protein. (123 aa)
	D910_08920	Endostatin domain-containing protein. (165 aa)
	D910_11889	Uncharacterized protein. (594 aa)
	D910_08921	Endostatin domain-containing protein. (226 aa)
	D910_10739	Collagen IV NC1 domain-containing protein. (1464 aa)
	D910_07749	Uncharacterized protein. (486 aa)
	D910_09251	Uncharacterized protein. (1323 aa)
	D910_06807	Uncharacterized protein. (2363 aa)
	D910_06541	ZnMc domain-containing protein. (475 aa)
	D910_01503	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (152 aa)
	D910_06177	Uncharacterized protein. (501 aa)
	D910_02557	Uncharacterized protein. (99 aa)
	D910_00859	Uncharacterized protein. (413 aa)
	D910_04416	Follistatin-like domain-containing protein. (278 aa)
	D910_01330	Uncharacterized protein. (136 aa)
	D910_04216	Laminin N-terminal domain-containing protein. (205 aa)
	D910_00401	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (810 aa)
	D910_02558	Protein kinase domain-containing protein. (337 aa)
	D910_06476	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1303 aa)
	D910_05739	NTR domain-containing protein. (254 aa)
	D910_01341	Uncharacterized protein. (622 aa)
	D910_04215	Uncharacterized protein. (1286 aa)
	D910_06809	Uncharacterized protein. (1379 aa)
	D910_07748	LAM_G_DOMAIN domain-containing protein. (264 aa)
	D910_08011	Uncharacterized protein. (432 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00136	D910_04857	U4URH1	U4UBZ2	Uncharacterized protein.	Uncharacterized protein.	0.583
D910_00136	D910_06807	U4URH1	U4UHT7	Uncharacterized protein.	Uncharacterized protein.	0.700
D910_00136	D910_06809	U4URH1	U4U8S5	Uncharacterized protein.	Uncharacterized protein.	0.667
D910_00136	D910_09251	U4URH1	U4UHW1	Uncharacterized protein.	Uncharacterized protein.	0.480
D910_00136	D910_12030	U4URH1	U4UWS0	Uncharacterized protein.	Uncharacterized protein.	0.588
D910_00137	D910_06807	U4UT45	U4UHT7	Laminin EGF-like domain-containing protein.	Uncharacterized protein.	0.700
D910_00137	D910_06809	U4UT45	U4U8S5	Laminin EGF-like domain-containing protein.	Uncharacterized protein.	0.667
D910_00137	D910_09251	U4UT45	U4UHW1	Laminin EGF-like domain-containing protein.	Uncharacterized protein.	0.480
D910_00137	D910_12030	U4UT45	U4UWS0	Laminin EGF-like domain-containing protein.	Uncharacterized protein.	0.588
D910_00401	D910_10566	U4TRT6	U4UT33	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.984
D910_00859	D910_05739	U4TZE1	U4U5N1	Uncharacterized protein.	NTR domain-containing protein.	0.743
D910_00859	D910_06098	U4TZE1	U4UDP4	Uncharacterized protein.	ZnMc domain-containing protein.	0.475
D910_01330	D910_04416	U4U0B0	U4TZH1	Uncharacterized protein.	Follistatin-like domain-containing protein.	0.465
D910_01330	D910_10741	U4U0B0	U4UTI9	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.781
D910_01341	D910_04815	U4TTD4	U4UBV3	Uncharacterized protein.	Uncharacterized protein.	0.946
D910_01341	D910_07400	U4TTD4	J3JXF6	Uncharacterized protein.	CDP-diacylglycerol--inositol 3-phosphatidyltransferase.	0.647
D910_01503	D910_06177	N6UJ54	N6TXU5	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein.	0.568
D910_01542	D910_10566	J3JX23	U4UT33	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.997
D910_04215	D910_04216	U4U886	U4U165	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.840
D910_04215	D910_06807	U4U886	U4UHT7	Uncharacterized protein.	Uncharacterized protein.	0.700