5 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_02808	Uncharacterized protein. (90 aa)
	D910_05810	Robl_LC7 domain-containing protein. (125 aa)
	D910_01790	Uncharacterized protein. (124 aa)
	D910_03350	Uncharacterized protein. (60 aa)
	D910_11080	Uncharacterized protein. (152 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01790	D910_02808	N6TPH2	N6SZC3	Uncharacterized protein.	Uncharacterized protein.	0.987
D910_01790	D910_03350	N6TPH2	N6UH29	Uncharacterized protein.	Uncharacterized protein.	0.998
D910_01790	D910_05810	N6TPH2	J3JZ49	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.999
D910_01790	D910_11080	N6TPH2	U4UIG1	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_02808	D910_01790	N6SZC3	N6TPH2	Uncharacterized protein.	Uncharacterized protein.	0.987
D910_02808	D910_03350	N6SZC3	N6UH29	Uncharacterized protein.	Uncharacterized protein.	0.998
D910_02808	D910_05810	N6SZC3	J3JZ49	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.999
D910_02808	D910_11080	N6SZC3	U4UIG1	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_03350	D910_01790	N6UH29	N6TPH2	Uncharacterized protein.	Uncharacterized protein.	0.998
D910_03350	D910_02808	N6UH29	N6SZC3	Uncharacterized protein.	Uncharacterized protein.	0.998
D910_03350	D910_05810	N6UH29	J3JZ49	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.999
D910_03350	D910_11080	N6UH29	U4UIG1	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_05810	D910_01790	J3JZ49	N6TPH2	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.999
D910_05810	D910_02808	J3JZ49	N6SZC3	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.999
D910_05810	D910_03350	J3JZ49	N6UH29	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.999
D910_05810	D910_11080	J3JZ49	U4UIG1	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.999
D910_11080	D910_01790	U4UIG1	N6TPH2	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_11080	D910_02808	U4UIG1	N6SZC3	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_11080	D910_03350	U4UIG1	N6UH29	Uncharacterized protein.	Uncharacterized protein.	0.999
D910_11080	D910_05810	U4UIG1	J3JZ49	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.999