16 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10932	Uncharacterized protein. (1487 aa)
	D910_09370	Uncharacterized protein. (3272 aa)
	D910_11391	Uncharacterized protein. (274 aa)
	D910_11389	Uncharacterized protein. (1320 aa)
	D910_11390	Uncharacterized protein. (359 aa)
	D910_11392	Uncharacterized protein. (1037 aa)
	D910_05271	Uncharacterized protein. (151 aa)
	D910_03348	Uncharacterized protein. (292 aa)
	D910_01141	PH domain-containing protein. (178 aa)
	D910_04339	GLTP domain-containing protein. (216 aa)
	D910_03224	PRELI/MSF1 domain-containing protein. (207 aa)
	D910_09467	GLTP domain-containing protein. (198 aa)
	D910_10136	PRELI/MSF1 domain-containing protein. (133 aa)
	D910_10769	CRAL-TRIO domain-containing protein. (225 aa)
	D910_06835	Uncharacterized protein. (946 aa)
	D910_06901	Uncharacterized protein. (401 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01141	D910_09467	N6UNY2	N6TT44	PH domain-containing protein.	GLTP domain-containing protein.	0.443
D910_03224	D910_06901	N6TTW3	U4UI26	PRELI/MSF1 domain-containing protein.	Uncharacterized protein.	0.412
D910_03224	D910_10136	N6TTW3	N6TNF4	PRELI/MSF1 domain-containing protein.	PRELI/MSF1 domain-containing protein.	0.840
D910_06901	D910_03224	U4UI26	N6TTW3	Uncharacterized protein.	PRELI/MSF1 domain-containing protein.	0.412
D910_09467	D910_01141	N6TT44	N6UNY2	GLTP domain-containing protein.	PH domain-containing protein.	0.443
D910_10136	D910_03224	N6TNF4	N6TTW3	PRELI/MSF1 domain-containing protein.	PRELI/MSF1 domain-containing protein.	0.840
D910_11389	D910_11390	U4ULV9	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11389	D910_11391	U4ULV9	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11389	D910_11392	U4ULV9	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11390	D910_11389	U4UNQ1	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.938
D910_11390	D910_11391	U4UNQ1	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11390	D910_11392	U4UNQ1	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11391	D910_11389	U4UJ58	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.915
D910_11391	D910_11390	U4UJ58	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_11391	D910_11392	U4UJ58	U4UV86	Uncharacterized protein.	Uncharacterized protein.	0.854
D910_11392	D910_11389	U4UV86	U4ULV9	Uncharacterized protein.	Uncharacterized protein.	0.939
D910_11392	D910_11390	U4UV86	U4UNQ1	Uncharacterized protein.	Uncharacterized protein.	0.911
D910_11392	D910_11391	U4UV86	U4UJ58	Uncharacterized protein.	Uncharacterized protein.	0.854