13 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_08462	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (415 aa)
	D910_05756	Uncharacterized protein. (819 aa)
	D910_06693	Uncharacterized protein; Belongs to the Stoned B family. (1120 aa)
	D910_07638	Uncharacterized protein. (706 aa)
	D910_09446	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (929 aa)
	D910_01975	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (157 aa)
	D910_11055	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	D910_03001	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	D910_07757	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (154 aa)
	D910_12142	AP3B1_C domain-containing protein. (1043 aa)
	D910_11552	Alpha_adaptinC2 domain-containing protein. (937 aa)
	D910_07941	I/LWEQ domain-containing protein. (913 aa)
	D910_04042	AP-1 complex subunit gamma. (996 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_01975	D910_03001	J3JU90	J3JY16	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.678
D910_01975	D910_04042	J3JU90	U4U9M5	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma.	0.998
D910_01975	D910_07638	J3JU90	U4UI51	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.998
D910_01975	D910_07757	J3JU90	U4UDN2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.430
D910_01975	D910_07941	J3JU90	U4U9J9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	I/LWEQ domain-containing protein.	0.634
D910_01975	D910_08462	J3JU90	N6SWJ6	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.621
D910_01975	D910_09446	J3JU90	U4UPP7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.930
D910_01975	D910_11055	J3JU90	J3JW23	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
D910_01975	D910_11552	J3JU90	N6TXW3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Alpha_adaptinC2 domain-containing protein.	0.930
D910_01975	D910_12142	J3JU90	N6TB90	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP3B1_C domain-containing protein.	0.849
D910_03001	D910_01975	J3JY16	J3JU90	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.678
D910_03001	D910_04042	J3JY16	U4U9M5	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.923
D910_03001	D910_06693	J3JY16	U4UFG2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein; Belongs to the Stoned B family.	0.887
D910_03001	D910_07638	J3JY16	U4UI51	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.999
D910_03001	D910_07757	J3JY16	U4UDN2	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
D910_03001	D910_08462	J3JY16	N6SWJ6	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.598
D910_03001	D910_09446	J3JY16	U4UPP7	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.937
D910_03001	D910_11055	J3JY16	J3JW23	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.634
D910_03001	D910_11552	J3JY16	N6TXW3	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Alpha_adaptinC2 domain-containing protein.	0.999
D910_03001	D910_12142	J3JY16	N6TB90	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP3B1_C domain-containing protein.	0.517