14 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_06780	Uncharacterized protein. (305 aa)
	D910_08163	Uncharacterized protein. (260 aa)
	D910_06108	LAM_G_DOMAIN domain-containing protein. (224 aa)
	D910_05955	Uncharacterized protein. (808 aa)
	D910_06693	Uncharacterized protein; Belongs to the Stoned B family. (1120 aa)
	D910_00779	Uncharacterized protein. (184 aa)
	D910_12825	Protein kinase domain-containing protein. (531 aa)
	D910_08162	Roc domain-containing protein. (384 aa)
	D910_08164	ANK_REP_REGION domain-containing protein. (591 aa)
	D910_01563	Uncharacterized protein. (457 aa)
	D910_01035	LAM_G_DOMAIN domain-containing protein. (60 aa)
	D910_06106	Uncharacterized protein. (246 aa)
	D910_06107	Uncharacterized protein. (377 aa)
	D910_10232	LAM_G_DOMAIN domain-containing protein. (456 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00779	D910_01563	U4V043	N6UTD1	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_00779	D910_06106	U4V043	U4U490	Uncharacterized protein.	Uncharacterized protein.	0.909
D910_00779	D910_06107	U4V043	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.900
D910_00779	D910_06108	U4V043	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.868
D910_00779	D910_10232	U4V043	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.900
D910_01035	D910_01563	U4TV28	N6UTD1	LAM_G_DOMAIN domain-containing protein.	Uncharacterized protein.	0.765
D910_01563	D910_00779	N6UTD1	U4V043	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_01035	N6UTD1	U4TV28	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_01563	D910_06106	N6UTD1	U4U490	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_06107	N6UTD1	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_06108	N6UTD1	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_01563	D910_08162	N6UTD1	U4UKX0	Uncharacterized protein.	Roc domain-containing protein.	0.992
D910_01563	D910_08163	N6UTD1	U4UCN6	Uncharacterized protein.	Uncharacterized protein.	0.992
D910_01563	D910_08164	N6UTD1	N6T055	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.992
D910_01563	D910_10232	N6UTD1	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_06106	D910_00779	U4U490	U4V043	Uncharacterized protein.	Uncharacterized protein.	0.909
D910_06106	D910_01563	U4U490	N6UTD1	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_06106	D910_06107	U4U490	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.906
D910_06106	D910_06108	U4U490	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.897
D910_06106	D910_10232	U4U490	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.899