9 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_06107	Uncharacterized protein. (377 aa)
	D910_00779	Uncharacterized protein. (184 aa)
	D910_12825	Protein kinase domain-containing protein. (531 aa)
	D910_10232	LAM_G_DOMAIN domain-containing protein. (456 aa)
	D910_01563	Uncharacterized protein. (457 aa)
	D910_01035	LAM_G_DOMAIN domain-containing protein. (60 aa)
	D910_06106	Uncharacterized protein. (246 aa)
	D910_06780	Uncharacterized protein. (305 aa)
	D910_06108	LAM_G_DOMAIN domain-containing protein. (224 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00779	D910_01563	U4V043	N6UTD1	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_00779	D910_06106	U4V043	U4U490	Uncharacterized protein.	Uncharacterized protein.	0.909
D910_00779	D910_06107	U4V043	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.900
D910_00779	D910_06108	U4V043	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.868
D910_00779	D910_10232	U4V043	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.900
D910_01035	D910_01563	U4TV28	N6UTD1	LAM_G_DOMAIN domain-containing protein.	Uncharacterized protein.	0.765
D910_01563	D910_00779	N6UTD1	U4V043	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_01035	N6UTD1	U4TV28	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_01563	D910_06106	N6UTD1	U4U490	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_06107	N6UTD1	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_01563	D910_06108	N6UTD1	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_01563	D910_10232	N6UTD1	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.765
D910_06106	D910_00779	U4U490	U4V043	Uncharacterized protein.	Uncharacterized protein.	0.909
D910_06106	D910_01563	U4U490	N6UTD1	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_06106	D910_06107	U4U490	U4UFN0	Uncharacterized protein.	Uncharacterized protein.	0.906
D910_06106	D910_06108	U4U490	U4UDQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.897
D910_06106	D910_10232	U4U490	U4UIQ5	Uncharacterized protein.	LAM_G_DOMAIN domain-containing protein.	0.899
D910_06107	D910_00779	U4UFN0	U4V043	Uncharacterized protein.	Uncharacterized protein.	0.900
D910_06107	D910_01563	U4UFN0	N6UTD1	Uncharacterized protein.	Uncharacterized protein.	0.765
D910_06107	D910_06106	U4UFN0	U4U490	Uncharacterized protein.	Uncharacterized protein.	0.906