27 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_03307	Uncharacterized protein. (200 aa)
	D910_08892	Uncharacterized protein. (165 aa)
	D910_07093	Ribosomal_S7 domain-containing protein. (233 aa)
	D910_03970	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (166 aa)
	D910_03651	Uncharacterized protein. (136 aa)
	D910_05573	Uncharacterized protein. (162 aa)
	D910_06841	Uncharacterized protein. (148 aa)
	D910_08625	Uncharacterized protein. (224 aa)
	D910_05871	Uncharacterized protein. (87 aa)
	D910_03440	t-SNARE coiled-coil homology domain-containing protein. (546 aa)
	D910_04881	Uncharacterized protein. (159 aa)
	D910_08020	Uncharacterized protein. (117 aa)
	D910_05844	Uncharacterized protein. (113 aa)
	D910_09944	Uncharacterized protein. (131 aa)
	D910_01218	Uncharacterized protein. (201 aa)
	D910_03766	Uncharacterized protein. (75 aa)
	D910_04381	Uncharacterized protein. (140 aa)
	D910_05335	Uncharacterized protein. (330 aa)
	D910_06759	Ribosomal_S10 domain-containing protein. (324 aa)
	D910_01661	MRP-S28 domain-containing protein. (317 aa)
	D910_03763	Uncharacterized protein. (325 aa)
	D910_04594	Uncharacterized protein. (547 aa)
	D910_06127	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (426 aa)
	D910_01081	Uncharacterized protein. (142 aa)
	D910_12265	Uncharacterized protein. (392 aa)
	D910_10893	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (271 aa)
	D910_00693	Uncharacterized protein. (222 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00693	D910_01081	U4UZW2	U4UJZ8	Uncharacterized protein.	Uncharacterized protein.	0.882
D910_00693	D910_01218	U4UZW2	N6UP60	Uncharacterized protein.	Uncharacterized protein.	0.988
D910_00693	D910_01661	U4UZW2	U4U7S8	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.947
D910_00693	D910_03307	U4UZW2	J3JTS2	Uncharacterized protein.	Uncharacterized protein.	0.841
D910_00693	D910_03440	U4UZW2	N6TE21	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.988
D910_00693	D910_03651	U4UZW2	N6SSX8	Uncharacterized protein.	Uncharacterized protein.	0.971
D910_00693	D910_03763	U4UZW2	U4U8V7	Uncharacterized protein.	Uncharacterized protein.	0.971
D910_00693	D910_03766	U4UZW2	U4U251	Uncharacterized protein.	Uncharacterized protein.	0.971
D910_00693	D910_04381	U4UZW2	U4U3S8	Uncharacterized protein.	Uncharacterized protein.	0.974
D910_00693	D910_04594	U4UZW2	U4UB58	Uncharacterized protein.	Uncharacterized protein.	0.874
D910_00693	D910_04881	U4UZW2	N6TJQ0	Uncharacterized protein.	Uncharacterized protein.	0.932
D910_00693	D910_05335	U4UZW2	U4U4G9	Uncharacterized protein.	Uncharacterized protein.	0.907
D910_00693	D910_05573	U4UZW2	N6T0A9	Uncharacterized protein.	Uncharacterized protein.	0.927
D910_00693	D910_05844	U4UZW2	N6UGX2	Uncharacterized protein.	Uncharacterized protein.	0.926
D910_00693	D910_05871	U4UZW2	N6TC39	Uncharacterized protein.	Uncharacterized protein.	0.924
D910_00693	D910_06127	U4UZW2	U4UFP9	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.986
D910_00693	D910_06759	U4UZW2	U4U690	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.982
D910_00693	D910_06841	U4UZW2	N6T0H6	Uncharacterized protein.	Uncharacterized protein.	0.993
D910_00693	D910_07093	U4UZW2	J3JXP0	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.991
D910_00693	D910_08020	U4UZW2	N6TXQ5	Uncharacterized protein.	Uncharacterized protein.	0.736