5 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_10968	Uncharacterized protein. (412 aa)
	D910_10311	Uncharacterized protein. (440 aa)
	D910_07118	Uncharacterized protein. (284 aa)
	D910_07119	Uncharacterized protein. (86 aa)
	D910_04046	Protein kinase domain-containing protein. (671 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_04046	D910_07118	U4TYD0	U4U9M6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.755
D910_04046	D910_07119	U4TYD0	U4UBP4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.755
D910_04046	D910_10311	U4TYD0	U4UGA7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.700
D910_04046	D910_10968	U4TYD0	N6T883	Protein kinase domain-containing protein.	Uncharacterized protein.	0.904
D910_07118	D910_04046	U4U9M6	U4TYD0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.755
D910_07118	D910_10311	U4U9M6	U4UGA7	Uncharacterized protein.	Uncharacterized protein.	0.483
D910_07118	D910_10968	U4U9M6	N6T883	Uncharacterized protein.	Uncharacterized protein.	0.992
D910_07119	D910_04046	U4UBP4	U4TYD0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.755
D910_07119	D910_10311	U4UBP4	U4UGA7	Uncharacterized protein.	Uncharacterized protein.	0.483
D910_07119	D910_10968	U4UBP4	N6T883	Uncharacterized protein.	Uncharacterized protein.	0.925
D910_10311	D910_04046	U4UGA7	U4TYD0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.700
D910_10311	D910_07118	U4UGA7	U4U9M6	Uncharacterized protein.	Uncharacterized protein.	0.483
D910_10311	D910_07119	U4UGA7	U4UBP4	Uncharacterized protein.	Uncharacterized protein.	0.483
D910_10311	D910_10968	U4UGA7	N6T883	Uncharacterized protein.	Uncharacterized protein.	0.971
D910_10968	D910_04046	N6T883	U4TYD0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.904
D910_10968	D910_07118	N6T883	U4U9M6	Uncharacterized protein.	Uncharacterized protein.	0.992
D910_10968	D910_07119	N6T883	U4UBP4	Uncharacterized protein.	Uncharacterized protein.	0.925
D910_10968	D910_10311	N6T883	U4UGA7	Uncharacterized protein.	Uncharacterized protein.	0.971