20 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_09022	RING-CH-type domain-containing protein. (352 aa)
	D910_08936	Uncharacterized protein. (444 aa)
	D910_11844	Uncharacterized protein. (833 aa)
	D910_07430	FYVE-type domain-containing protein. (781 aa)
	D910_06960	Uncharacterized protein. (162 aa)
	D910_05756	Uncharacterized protein. (819 aa)
	D910_08492	Uncharacterized protein. (3571 aa)
	D910_04229	Uncharacterized protein. (101 aa)
	D910_03895	PX domain-containing protein. (415 aa)
	D910_05808	PX domain-containing protein. (452 aa)
	D910_03376	CRAL-TRIO domain-containing protein. (298 aa)
	D910_01032	Uncharacterized protein. (148 aa)
	D910_03198	DUF3480 domain-containing protein. (575 aa)
	D910_03197	FYVE-type domain-containing protein. (778 aa)
	D910_03103	J domain-containing protein. (2244 aa)
	D910_06403	Rho-GAP domain-containing protein. (688 aa)
	D910_04488	Uncharacterized protein. (215 aa)
	D910_10836	PX domain-containing protein. (280 aa)
	D910_12637	CRAL-TRIO domain-containing protein. (287 aa)
	D910_12827	Uncharacterized protein. (2129 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_03197	D910_03198	U4TY92	U4U0F6	FYVE-type domain-containing protein.	DUF3480 domain-containing protein.	0.830
D910_03198	D910_03197	U4U0F6	U4TY92	DUF3480 domain-containing protein.	FYVE-type domain-containing protein.	0.830
D910_03895	D910_05808	U4U7A6	U4U5U2	PX domain-containing protein.	PX domain-containing protein.	0.589
D910_03895	D910_12827	U4U7A6	U4UYT9	PX domain-containing protein.	Uncharacterized protein.	0.544
D910_05756	D910_12827	U4UEP3	U4UYT9	Uncharacterized protein.	Uncharacterized protein.	0.986
D910_05808	D910_03895	U4U5U2	U4U7A6	PX domain-containing protein.	PX domain-containing protein.	0.589
D910_05808	D910_12827	U4U5U2	U4UYT9	PX domain-containing protein.	Uncharacterized protein.	0.544
D910_06403	D910_12827	N6USC1	U4UYT9	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.439
D910_12827	D910_03895	U4UYT9	U4U7A6	Uncharacterized protein.	PX domain-containing protein.	0.544
D910_12827	D910_05756	U4UYT9	U4UEP3	Uncharacterized protein.	Uncharacterized protein.	0.986
D910_12827	D910_05808	U4UYT9	U4U5U2	Uncharacterized protein.	PX domain-containing protein.	0.544
D910_12827	D910_06403	U4UYT9	N6USC1	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.439