40 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_03680	t-SNARE coiled-coil homology domain-containing protein. (64 aa)
	D910_02370	Uncharacterized protein. (1492 aa)
	D910_01613	Uncharacterized protein. (128 aa)
	D910_00834	Uncharacterized protein. (1581 aa)
	D910_01590	Uncharacterized protein. (126 aa)
	D910_05326	Uncharacterized protein. (462 aa)
	D910_05386	Uncharacterized protein. (1502 aa)
	D910_06081	Uncharacterized protein. (1335 aa)
	D910_02206	Uncharacterized protein. (1072 aa)
	D910_00140	Uncharacterized protein. (77 aa)
	D910_12581	EGF_2 domain-containing protein. (229 aa)
	D910_12582	Tox-GHH domain-containing protein. (1613 aa)
	D910_10177	Uncharacterized protein. (1178 aa)
	D910_10012	Uncharacterized protein. (797 aa)
	D910_12580	Uncharacterized protein. (493 aa)
	D910_10415	Uncharacterized protein. (1062 aa)
	D910_09390	Uncharacterized protein. (653 aa)
	D910_10013	Uncharacterized protein. (207 aa)
	D910_08903	Protein kinase domain-containing protein. (109 aa)
	D910_10316	Rho-GAP domain-containing protein. (965 aa)
	D910_06693	Uncharacterized protein; Belongs to the Stoned B family. (1120 aa)
	D910_08902	Protein kinase domain-containing protein. (124 aa)
	D910_05533	Methyltranfer_dom domain-containing protein. (204 aa)
	D910_07876	Uncharacterized protein. (490 aa)
	D910_05179	Uncharacterized protein. (489 aa)
	D910_07875	PDZ domain-containing protein. (208 aa)
	D910_05385	Uncharacterized protein. (1733 aa)
	D910_01283	Uncharacterized protein. (129 aa)
	D910_05180	SH3 domain-containing protein. (561 aa)
	D910_03679	Uncharacterized protein. (107 aa)
	D910_07184	t-SNARE coiled-coil homology domain-containing protein. (287 aa)
	D910_00277	Protein kinase domain-containing protein. (234 aa)
	D910_10416	Uncharacterized protein. (86 aa)
	D910_07874	Uncharacterized protein. (318 aa)
	D910_01591	Uncharacterized protein. (469 aa)
	D910_05638	Uncharacterized protein. (290 aa)
	D910_10014	Uncharacterized protein. (187 aa)
	D910_08489	Uncharacterized protein. (268 aa)
	D910_03083	Uncharacterized protein. (1041 aa)
	D910_10011	Uncharacterized protein. (218 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_00140	D910_00834	U4UZ75	U4TZI3	Uncharacterized protein.	Uncharacterized protein.	0.452
D910_00140	D910_01283	U4UZ75	U4UB36	Uncharacterized protein.	Uncharacterized protein.	0.933
D910_00140	D910_01590	U4UZ75	U4U0X7	Uncharacterized protein.	Uncharacterized protein.	0.436
D910_00140	D910_01591	U4UZ75	U4TTW9	Uncharacterized protein.	Uncharacterized protein.	0.436
D910_00140	D910_01613	U4UZ75	U4TW84	Uncharacterized protein.	Uncharacterized protein.	0.436
D910_00140	D910_02206	U4UZ75	U4U2F4	Uncharacterized protein.	Uncharacterized protein.	0.497
D910_00140	D910_03679	U4UZ75	U4U8J6	Uncharacterized protein.	Uncharacterized protein.	0.412
D910_00140	D910_03680	U4UZ75	U4U6N1	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.412
D910_00140	D910_05179	U4UZ75	U4UCW2	Uncharacterized protein.	Uncharacterized protein.	0.488
D910_00140	D910_05180	U4UZ75	U4UB12	Uncharacterized protein.	SH3 domain-containing protein.	0.488
D910_00140	D910_06081	U4UZ75	U4U462	Uncharacterized protein.	Uncharacterized protein.	0.989
D910_00140	D910_07184	U4UZ75	U4U7F9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.412
D910_00140	D910_07874	U4UZ75	N6UQ25	Uncharacterized protein.	Uncharacterized protein.	0.573
D910_00140	D910_07875	U4UZ75	U4UBU1	Uncharacterized protein.	PDZ domain-containing protein.	0.573
D910_00140	D910_07876	U4UZ75	U4UDZ2	Uncharacterized protein.	Uncharacterized protein.	0.573
D910_00140	D910_10415	U4UZ75	U4UKU8	Uncharacterized protein.	Uncharacterized protein.	0.549
D910_00140	D910_10416	U4UZ75	N6UJ65	Uncharacterized protein.	Uncharacterized protein.	0.549
D910_00277	D910_06081	U4TTX3	U4U462	Protein kinase domain-containing protein.	Uncharacterized protein.	0.654
D910_00277	D910_07874	U4TTX3	N6UQ25	Protein kinase domain-containing protein.	Uncharacterized protein.	0.599
D910_00277	D910_07875	U4TTX3	U4UBU1	Protein kinase domain-containing protein.	PDZ domain-containing protein.	0.599