8 items (Dendroctonus ponderosae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D910_01135	C2 domain-containing protein. (156 aa)
	D910_09358	Uncharacterized protein. (519 aa)
	D910_06761	Uncharacterized protein. (295 aa)
	D910_08568	Uncharacterized protein. (546 aa)
	D910_08309	Uncharacterized protein. (488 aa)
	D910_02772	Uncharacterized protein. (324 aa)
	D910_11968	C2 domain-containing protein. (264 aa)
	D910_01214	C2 domain-containing protein. (160 aa)

Your Current Organism:

Dendroctonus ponderosae

NCBI taxonomy Id: 77166
Other names: D. ponderosae, mountain pine beetle

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D910_06761	D910_08309	U4UFP1	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.621
D910_06761	D910_08568	U4UFP1	U4UDV1	Uncharacterized protein.	Uncharacterized protein.	0.404
D910_06761	D910_09358	U4UFP1	U4UPE8	Uncharacterized protein.	Uncharacterized protein.	0.546
D910_08309	D910_06761	U4UD35	U4UFP1	Uncharacterized protein.	Uncharacterized protein.	0.621
D910_08309	D910_08568	U4UD35	U4UDV1	Uncharacterized protein.	Uncharacterized protein.	0.499
D910_08309	D910_09358	U4UD35	U4UPE8	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_08568	D910_06761	U4UDV1	U4UFP1	Uncharacterized protein.	Uncharacterized protein.	0.404
D910_08568	D910_08309	U4UDV1	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.499
D910_08568	D910_09358	U4UDV1	U4UPE8	Uncharacterized protein.	Uncharacterized protein.	0.535
D910_09358	D910_06761	U4UPE8	U4UFP1	Uncharacterized protein.	Uncharacterized protein.	0.546
D910_09358	D910_08309	U4UPE8	U4UD35	Uncharacterized protein.	Uncharacterized protein.	0.863
D910_09358	D910_08568	U4UPE8	U4UDV1	Uncharacterized protein.	Uncharacterized protein.	0.535